Protein Info for mRNA_1385 in Rhodosporidium toruloides IFO0880

Name: 9753
Annotation: K06966 K06966 uncharacterized protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 TIGR00730: TIGR00730 family protein" amino acids 14 to 169 (156 residues), 151.4 bits, see alignment E=1.1e-48 PF18306: LDcluster4" amino acids 29 to 132 (104 residues), 40.2 bits, see alignment E=2.7e-14 PF03641: Lysine_decarbox" amino acids 57 to 169 (113 residues), 105.2 bits, see alignment E=3e-34

Best Hits

Predicted SEED Role

"Lysine decarboxylase family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (266 amino acids)

>mRNA_1385 K06966 K06966 uncharacterized protein (Rhodosporidium toruloides IFO0880)
MTASRLAQPEEEQAITVFCGSSPGKDPIYGEAADQLARALARRGVTLIFGGGTKGLMGRV
SSKALDEGGKVHGIIPAAFLSAEAPDRANSTRPNEQETVVGSMHERKKLMADLSYAFIGL
PGGYGTLEEVAEMTTWSQIGVHLKPVVLLNINGFYSSLREFINQCVGSASFLQPATLIRV
VSAHLPSASSPASPPSYSRLKRSAISSGFISESNRNFLIFVDQPESGDWGEAALQAIDVW
KAKGAGGAVPYSFEWSEDRKKGREVL