Protein Info for mRNA_1406 in Rhodosporidium toruloides IFO0880
Name: 9774
Annotation: K00002 AKR1A1, adh alcohol dehydrogenase (NADP+)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 66% identical to ALDX_SPOSA: Aldehyde reductase 1 (ARI) from Sporidiobolus salmonicolor
KEGG orthology group: None (inferred from 56% identity to pno:SNOG_02188)MetaCyc: 54% identical to D-glyceraldehyde reductase / L-glyceraldehyde reductase (Trichoderma reesei)
Glycerol dehydrogenase (NADP(+)). [EC: 1.1.1.372, 1.1.1.72]; 1.1.1.372 [EC: 1.1.1.372, 1.1.1.72]
Predicted SEED Role
"oxidoreductase of aldo/keto reductase family, subgroup 1"
MetaCyc Pathways
- D-galacturonate degradation III (3/5 steps found)
- superpathway of microbial D-galacturonate and D-glucuronate degradation (6/31 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 1.1.1.372 or 1.1.1.72
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (326 amino acids)
>mRNA_1406 K00002 AKR1A1, adh alcohol dehydrogenase (NADP+) (Rhodosporidium toruloides IFO0880) MSSQSVPTVQLHNGKSFPLLGFGTWQSAPGEVGNAVSVALKAGYRHLDLAKVYQNQKEIA PAIANSGVLREEMFITSKLWNSQHRPDLVEPALDDTLKELGLSYLDLYLIHWPVAFPAEG DPHQNLFPKANDNEVKIDDSVSLVDTWKAMIKLLDTGKVRSIGVSNFSPEMVDAITEATG VKPVVNQIERHPHLLQRELIEHHKKANIVITAYSGFGNNSEGVPLLFQHPIVKKIAENHG ADGGQVLIAWGMHGGHAIIPKSVTESRIQSNFKIIQLDEASIKEIDSIGEKEPRRFNLPR AYAPSWPIDVFGEAKEQGAKYQVKIK