Protein Info for mRNA_1410 in Rhodosporidium toruloides IFO0880

Name: 9778
Annotation: K02920 RP-L36e, RPL36 large subunit ribosomal protein L36e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 102 PF01158: Ribosomal_L36e" amino acids 5 to 99 (95 residues), 133.3 bits, see alignment E=1.5e-43

Best Hits

Swiss-Prot: 66% identical to RL36_TRIHM: 60S ribosomal protein L36 (rpl36) from Trichoderma hamatum

KEGG orthology group: K02920, large subunit ribosomal protein L36e (inferred from 70% identity to cci:CC1G_00377)

Predicted SEED Role

"LSU ribosomal protein L36e"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (102 amino acids)

>mRNA_1410 K02920 RP-L36e, RPL36 large subunit ribosomal protein L36e (Rhodosporidium toruloides IFO0880)
MAARSNLPWGLNRGHPTTVIAKVPKPSNRKGKQSARSAFVKSVVREVAGFAPYERRVMEL
IRNSKDKKARKLTKKRLGTLRRAKRKVDELTGVIAEQRRHAA