Protein Info for mRNA_1418 in Rhodosporidium toruloides IFO0880

Name: 9786
Annotation: HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 77 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details PF08520: DUF1748" amino acids 3 to 71 (69 residues), 77.4 bits, see alignment E=3.1e-26

Best Hits

Swiss-Prot: 34% identical to YI156_YEAST: Uncharacterized protein YIL156W-B (YIL156W-B) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: None (inferred from 50% identity to lbc:LACBIDRAFT_184762)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (77 amino acids)

>mRNA_1418 HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520 (Rhodosporidium toruloides IFO0880)
MVLGRLMHYTFDIALVTTVLAGVKRHTGFQVNTSTIPEGPFRQTADVVLGTGERLFDFAS
AMSYTSSLFERETPKPK