Protein Info for mRNA_1420 in Rhodosporidium toruloides IFO0880

Name: 9788
Annotation: KOG4269 Rac GTPase-activating protein BCR/ABR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 788 PF00620: RhoGAP" amino acids 213 to 404 (192 residues), 99.7 bits, see alignment E=7.3e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (788 amino acids)

>mRNA_1420 KOG4269 Rac GTPase-activating protein BCR/ABR (Rhodosporidium toruloides IFO0880)
MFTVSRPTPSHSPERSRHRPPQHPSISSSASIISSTSSMSLNPSSALSAIGRGFQQAKLK
DRFGAGVGFAREWGGKGKGKLQESWRGFGGPRSPGESSSPSTSPPISASSSPVPSFGSLS
SSVSTPHLEHLSAPSPPYPSPSPPPGGTSIKLPTTLFGIRVPNARGLAFGRPLAPLVEAT
RSPPSLSSLPRTRGADDEVTGLDARYWLPGLAFRCLEYLEEWGKKEEGVYRIPGRSLHTQ
QLRAVFDAGVGQEVDLREIHPGDLDPHAVASVLKSWLREIPEPLLSHDLEPVVDALTTSA
LGYPASSTNFLSNAASASSTTPSTLPSANGVVSGTSAATAAVSADTRAPRSYLEHLSTLF
STSLPAENYHLLRAIAYHLAHLSAHSETNKMTLTNLRLILSPTLRLSPGFLQVLVVEREI
LFSKANESARSRQASASGYHSPTLSSSASFRTRSPSPQYPIRRSPTPGTSSPLLEPPSPS
FPAASASSDGHLSPIVTPTVAAFDFPPPSPSQIPLSSPSQPATTPNSTATPIAAKFAGTS
PPLRTTKSASNLLSPSASTAQKPAFVPSRDRANGAGGGGFFASRDAVVPPRKGSATSLGL
GIGAKKTDEEEAREKKQDGRLSLGEEFRQAIDSLGKPLTPETAKKVGEEFEASLGGENEP
EERLVDQRETRSRPARPSHRTQRSVSSIRSFASSLASSITSSSLSTLANNASETDLKSAQ
VQQASRRKGPPPALGTKQRPTTMDLTLPMPSGIGIGLGLASPREGKERDEEEKWTLLSFE
EKKKLFGG