Protein Info for mRNA_1422 in Rhodosporidium toruloides IFO0880

Name: 9790
Annotation: K12236 NFX1 transcriptional repressor NF-X1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1183 PF01422: zf-NF-X1" amino acids 291 to 308 (18 residues), 12.3 bits, see alignment (E = 1.5e-05) amino acids 359 to 376 (18 residues), 20.5 bits, see alignment (E = 4.1e-08) amino acids 434 to 445 (12 residues), 13.3 bits, see alignment (E = 7.4e-06) amino acids 499 to 516 (18 residues), 19.4 bits, see alignment (E = 9e-08) amino acids 568 to 579 (12 residues), 3.2 bits, see alignment (E = 0.011) amino acids 628 to 645 (18 residues), 17.4 bits, see alignment (E = 3.9e-07) amino acids 741 to 764 (24 residues), 13.2 bits, see alignment (E = 7.8e-06) PF01424: R3H" amino acids 872 to 929 (58 residues), 63.7 bits, see alignment 1.3e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1183 amino acids)

>mRNA_1422 K12236 NFX1 transcriptional repressor NF-X1 (Rhodosporidium toruloides IFO0880)
MATQVATQQQQPSQAQQTASSSSATRGSSRSRRSHRGRGRGGQNAAQGQSRADAAGGEHA
EAVADERAASSARRGGGRGGRGGARGGRGGSRGGGQNGVGAGVPRPAGQGRRARFDATLS
SSSAGLHASAAPFVPPSASSAPASGTSTPPAPAPVNQTLVERLTAEISSGEAECTVCFDT
ISRTARIYSCTECHMPFHLSCINKWASTAVSASAERAQLLASRQTDSRNPPDPASLEGHW
ACPNCNTNFKPADVPSKYFCFCRRYVDPHPRPPAIPHSCGKPCAKPRPAGCRHPCSLSCH
PGPCPPCPVVLNEKCHCGRRTLGLRCSALHDGKKDTEERRAAKEALKSCGETHDALLSCG
LHRCEKSCHEGECGECEAVRIKRCFCGRNETEGLCGATRPDERIDGCRVPGDPAQEVWTG
EFACSSRCNALFDCGRHRCEETCHPHTSPTPPHCPFSPDIVITCPCGQTSLSTLLPSPRS
SCTDRIPTCAKTCSKILDCGHACRQTCHDGPCPPCRETVPLVCRCGSTKTTRLCGEPYLA
TRVDPDSGEVVTTDEFLCARVCKAQKWCGRHQCGRTCCPLAYQEALMAGKGKGKKRAVTL
QESLAEQEAQDPLGLHLCDRVCGRKLNCGIHNCELKDHRGACPPCLRADFDELVCNCGST
VVLPPIPCNFVIDCRHPCIRPSDCGHPRLPHACHEDPQCPPCPYLTVKRCACGKREVPNV
RCATDEKKVSCGMVCGKLLRCGGHRCRKSCHPPGECETVDDQVCLKPRKHCGHPCPLPCH
FPSACPADTPCPKLIPVHCACGHITQNARCGACDDKPEGNEGRLLKCTDACAVAKRNAQL
AEALGVEKREVKTKEVEYSPELLSFFAANQAWAQQIETQLVEFVKGDKPSLHFPVMKRPQ
RVFIHELTDHYDLRSESLDEEPRRSVVAHRTSTTGIPSPTLAEALAATKKPASATLSLGS
LRRALPEKRKENAIYLEGVLGYDEEMLSDILRPHMRGLNYSLTWVTDEDVLVSFDAPVVD
LDTKLASVASALRTVIADTGFCVSAEAVHVRDDGRIARGSWTPVLGSSSTPMSTKGSSTG
SANAWRMPLKTGNSFASLSAGNSPPRAQQPVANAWGSVIGNGHAKPPRAVVAPCGEEERA
LPSLSAPTSSAPSRIPTPSLPPPPPPVAKKDEDVPDEWDADVE