Protein Info for mRNA_1441 in Rhodosporidium toruloides IFO0880

Name: 9809
Annotation: K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF07992: Pyr_redox_2
  • amino acids 49 to 398 (350 residues), 134.3 bits, E=5.6e-43
• PF00070: Pyr_redox
  • amino acids 232 to 312 (81 residues), 29.9 bits, E=6.8e-11

Best Hits

KEGG orthology group: K03885, NADH dehydrogenase [EC: 1.6.99.3] (inferred from 52% identity to scm:SCHCODRAFT_56625)

Predicted SEED Role

"NADH dehydrogenase (EC 1.6.99.3)" in subsystem Carboxysome or Respiratory dehydrogenases 1 (EC 1.6.99.3)

MetaCyc Pathways

• aerobic respiration I (cytochrome c) (3/4 steps found)
• aerobic respiration III (alternative oxidase pathway) (2/3 steps found)
• NADH to cytochrome bd oxidase electron transfer I (1/2 steps found)
• NADH to cytochrome bo oxidase electron transfer I (1/2 steps found)
• Fe(II) oxidation (2/6 steps found)
• NAD(P)/NADPH interconversion (2/6 steps found)

KEGG Metabolic Maps

• Oxidative phosphorylation

Isozymes

Compare fitness of predicted isozymes for: 1.6.99.3

Use Curated BLAST to search for 1.6.99.3

Protein Sequence (492 amino acids)

>mRNA_1441 K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic) (Rhodosporidium toruloides IFO0880)
MLGTTATVARTGRPSPRSAATSALRTSKLTSPGSSARLFSSSPRWDKQKLVILGSGWGGY
EVLRKVDRKRYDVTVISPNSYFAFTPLLASASVGTIDYNSALEPVRRFHDITYYQAWADK
VDFSRKQLVCMPATGSSTRKRINASISDATDSSIQPTASFPGYKPFEISYDKLVIAVGCY
SATFGIPGVSANGYFLKDIRDSNKIRSRILECFELASQPTVTDVERRNLLSFAIVGGGPT
GVEFAGELHDLTTTELAEAYPKLSRLVNITIYDVAPGILGSFDKSLAEYATAKFVREGIQ
IKGSRHVTAVHEGYLEIKEEGKVPFGLLVWNTGLAPNPLIQSIKELQKDEKTKSLKINDT
FNPVTNEGKELKDVFVIGDASALKQKLPATAQVASQEAHWLSKILNAEARGQESPGGFTF
HNRGTMAYLGDWSAILDRSQVEEGPKGELTGRTAWLAWRSAYWLQALSFRNRVSLAYHWF
ATWLGGRRLSRF