Protein Info for mRNA_1442 in Rhodosporidium toruloides IFO0880

Name: 9810
Annotation: K03549 kup KUP system potassium uptake protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 768 transmembrane" amino acids 39 to 61 (23 residues), see Phobius details amino acids 77 to 99 (23 residues), see Phobius details amino acids 159 to 178 (20 residues), see Phobius details amino acids 198 to 216 (19 residues), see Phobius details amino acids 228 to 254 (27 residues), see Phobius details amino acids 274 to 292 (19 residues), see Phobius details amino acids 300 to 318 (19 residues), see Phobius details amino acids 349 to 376 (28 residues), see Phobius details amino acids 399 to 420 (22 residues), see Phobius details amino acids 427 to 449 (23 residues), see Phobius details amino acids 456 to 478 (23 residues), see Phobius details amino acids 484 to 505 (22 residues), see Phobius details amino acids 575 to 591 (17 residues), see Phobius details amino acids 615 to 633 (19 residues), see Phobius details TIGR00794: potassium uptake protein" amino acids 41 to 747 (707 residues), 547.1 bits, see alignment E=3.3e-168 PF02705: K_trans" amino acids 43 to 661 (619 residues), 545.4 bits, see alignment E=7.2e-168

Best Hits

Predicted SEED Role

"Kup system potassium uptake protein" in subsystem Potassium homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (768 amino acids)

>mRNA_1442 K03549 kup KUP system potassium uptake protein (Rhodosporidium toruloides IFO0880)
MAAVTAPASSDKELKSDSALTNASFEPPERPKITTRQTLVLAFLSLGVIYGDIGTSTLYT
LNGIFPAAGAMPSEEDILGGVSAIVWAILLVPVIKYCLIALEFGTSHGEGGPFAVFTTLY
PPRQSKQDGWRTLTTYTMATAPPSSLAATSFLHRPLIKLFLFCLTLFGVCLTVADGMLTP
AVSVTSAVVGLSYGAPKAASAVVGISCGILVVLFMVQPFGTKKIATLFSPIVLVWLALNG
VCGIINIAAHPAIFRAFDPSRAVMLFVRTKNFDLLAGVILCITGVEALFANLGQFSKGSI
RLAFCCFAAPCLVLQYLGQGAKLITGGEAVLSNVFFNAIPGGVGGGLWWTVWIFAVLAAV
IASQAMITATFSLVEQLVSLNVMPPIRIVHTDSTSRGRIFVPAINFLVLVGTLGLTIGFG
TEAGLTNAYGLAVSGVMFITTSILAVAMVQVKHLSVLVAIGYFLLSAFIDGLFFGASLKK
VPTGAWFSIGLATILLVLLLGWSWARGLEEQFDKNHRYRLSEVMKPSRGAADDAVNEKKD
EQEGEAEAVAVAQLERGGAAGPVQRRRPLPPAYEAAVGGASLARLPVFALFHNHSSSGSD
GAPHSFVGFLRSYPALPRIIIFLSVRVVGVPHVAPEDRFLVDRLRQFDGLYTATVSFGYR
DKIDLSGVARPLRDRIVALESRSVEGREELVEKVAKIDEALNGAVTHILPHYHISADKSS
RRPWLVNYLRSFMLEEVYRRVKVNFDAYEEWDFGSEEDVLRMGVAASL