Protein Info for mRNA_1445 in Rhodosporidium toruloides IFO0880

Name: 9813
Annotation: K20045 ITSN intersectin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1801 PF12763: EF-hand_4" amino acids 192 to 286 (95 residues), 50.1 bits, see alignment 8.3e-17 PF02205: WH2" amino acids 1023 to 1049 (27 residues), 33 bits, see alignment (E = 1.4e-11) PF00018: SH3_1" amino acids 1194 to 1239 (46 residues), 40.2 bits, see alignment (E = 7.2e-14) PF14604: SH3_9" amino acids 1195 to 1241 (47 residues), 30.4 bits, see alignment (E = 1e-10) PF00621: RhoGEF" amino acids 1486 to 1658 (173 residues), 137.6 bits, see alignment E=2.1e-43 PF16652: PH_13" amino acids 1683 to 1792 (110 residues), 45.2 bits, see alignment 3.2e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1801 amino acids)

>mRNA_1445 K20045 ITSN intersectin (Rhodosporidium toruloides IFO0880)
MSWLNQPYTGPYGQPQQAQQGFMQPQQTGYMQPQRTGFVPQQGYQQPQPTGFGGQGGMMG
GGGMPPPLPMQPQPTGFMGAPMQRPMATGFPQQAPPQQQQQQPARLVPQPTGFNSSGLGA
GVQQSFLSTFMPSQSIQAQSSSYIPPSQMQFASQQPLSSQPTGLQPPPLQAQFQSSNLAQ
TGSSQISIPWELTKEEKKRYDQIFRAWDKGGSGFLPGSMAKEVFGQSGLGQEDLMAIWNL
ADVSDRGKLNIDEFHVAMGLIYRRLNGNPIPHTLPPEMAPPSARDLEDSANFLTSLLKND
TNRRATQGEGSVQSRAKMRSLHEQGQGGASRKDATVFRNDDDATPVYKSSSRHLNRDDVR
SSSSRGNDSPSSELDDVKRRLRDAQRDVDRSRDEDDEEEDLKEELRRLNRKIQRVQDDLD
DNRRSGRRTAAKDEERRMLERELLRLEHEDLPRLEKRIEDKEREKRLERKKYAVERDDRN
ATFGRYDDKRDRERDRYERERDRGYSASKYGNGDDDDREEERGYNRGTYDRDGRDRSRYA
PSPPRRQSPPARSRTPPPPPPPPAADKKIDAPPPPPPTQPPAPSCASPSPAPDLKSMSPA
ERQAFIRAEAQRRVQERLRALGVAAPSAGAGVDTSVQERLEADKAEAARKAAEADEQLKA
KELERQARLERERQKGVAVEQALQETQREGEVVQQVREEIKGAGTLEGQGNEPKHAVKAA
EDQLDAEEKALREREEQLQREKEERRRRIEQLEREAKEAEENFQRSKAAFSSAGKAKAPP
PPPASRGKPAPPPSRKPAPSPAPSRAPQHDDDDDFAAPAPRSSAASPSPPPAPPAPPVPT
VASPPPSLSPPAVISPAKSPSTNPFHRLQGGGAPSPAAAPGAGKPNPFFASAAPPAAPAP
PPAPPAPAAAASKPAFRPPPSDDDDWDAPAGLEKDVDESDSDDEPALGSARARQAALAQN
LFSGLGLGGGRSSPSSSTPPTRSAVASPAPGANGAPAPPPPPPAPGAPPAPKAPSVPLGG
AAGPADRGALLGQIQGGLKLRKATTVDKSGPVGAGAVIGDASPPVQHYVPPPSPPREPTP
PPPAAPESEQSYQQLEEPEQATPAHEEPETLPAIVTEDPLAAVDLTKTIRVRSLYGYEAQ
RDEDLSFAENRVLLAHPAKDSSGDWWYGSTELEGAKLGWFPKGYVEEIHAQPARALYSYT
ATSPDELSFEEETNLAIVDRSDESWWKAEKDSVIGLVPATYFEISAPGENGAATQASNGN
HLNAADSSDDEPDSEDEESSAAREKERLRVLEAAGLLVKAPEPNETSKRRRRPPPARPQR
RPRSSVAPSLTQESRPAAEEEEDDEEEARPEESEERMEDAYDLYQRAMREQHSATLHPPP
HPSPSLPQGSPPPSPGLSVTPSTTAAVKDAWHSTTANLFGRRSRSGTVATADKPRPVISS
PLVPQGESNENSNRASGVFGTSWSSLVDESALDGLPDSERKRQEAIFELVATEQSYVQSL
QLVIEVFLNALQPVLPEKAQQVIFANIEDIVLFNTVFLSELEERQRESRLYINTIGDVVK
EHMRGLGSHYRGYCVNQSNAARTLKDLKRSDSSLRSLLDGLRVKNLELEHFLLEPMQRVT
RYLLLVNQILRYTPTDHPDHQPLERALQIAETTLNDINEAVRAHENQEKLAWLTDTVVFP
GVAGRLDLTAPTRLLGPRRIVREGKLEKAKSKRKLQAYLFNDLLLLTEDQGSTQSVYRYP
IPLEECSVRPHPRDNTDLLITHRGDAIRLRAENSRLAFAWVRDIDQARNEVLKAIEAARF
G