Protein Info for mRNA_1451 in Rhodosporidium toruloides IFO0880

Name: 9819
Annotation: K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1107 transmembrane" amino acids 215 to 233 (19 residues), see Phobius details amino acids 811 to 828 (18 residues), see Phobius details PF03098: An_peroxidase" amino acids 158 to 238 (81 residues), 26.5 bits, see alignment 2.6e-10 amino acids 240 to 601 (362 residues), 81 bits, see alignment E=7.7e-27 PF00067: p450" amino acids 962 to 1057 (96 residues), 39 bits, see alignment E=4.7e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1107 amino acids)

>mRNA_1451 K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2 (Rhodosporidium toruloides IFO0880)
MATQRPQRPAPTPQQRKQSSSFLSTIKSKVTRSKSSQTSVMTLVDTILAAPPSPNGDGLK
DSETRALSDAKPTKSLASNVWNEIKSGVLGKDIATLAQIAKSAGEPIDDREMLLENIVTI
LQKEQEGSPIREPVTHTLLKVLWDDLSHPPIAFTGPQYRSIDGYGTSLTDPSLGKAGTPY
ARSVPPCHPKPPQMPDPSVVFDALLRRKEFKPHPSGISSLLFSFATIIIHSCFQTSRTDP
NINETSSYLDLSPLYGINEKEMSGVRTYEQGRLHPDVVASNRLFFMPPSVVALLVVFSRN
HNFIVEKLFQINENGKYKPWDQLDEAGRKWQDMDLFEKGRLINCGWFTNVIIYDYVRTIL
NLNTTESTWNLAPSPDIQNLISGHAPRGTGNAVSAEFNILYRWHAAISKKDEEWIEGVFK
QCLGDVSLDDVTEADFMKALGKLNAKQGADPTKWEIPGIQRTASGAFDDNDLCRILAEAT
DEIAGAFGANGSPVAMRIIDVLGMATARTEWNVCTMNEFRKFLNLKPFNDFEDWNSDPSV
AEAARHLYSHIDNLELFPGLHAEEAKPSREGSGLAPGYTISRAILSDAVALVRGDRFLTT
DLCSANLTSWGFQDVQPDTDGGSYGGVIGKLLMRNLPRSYTYNSTYALFPFSTPATMEAI
LKKNGVYDNYDLRRPQPAPPVHGTSTYAGAMYVLSKPDTFGVIYDESIKACSNSFGYFIS
LDDPDAHRRDRDVQSKALFPYGWQDEMKKFYAEKTAELIENKSWNYVGKTMMLDVVRDVT
NLAAVHWCSYQFGIPLKTTETPHGVFTPQELYLMLSAFFISVFMNFDVSASLKLRKAAAE
FAPAVLGIIKMRLSQVSGVPAILDNLARSIQDMVVGKNVQGIVMGKAAREYYERLLQNDR
PMEQLEASVQSTMTASVSNQGQAAAQVINFFLADENKEHKDELVRLSKLDTPEADNQILS
LVSEAMRLDPQVPLIPRVTKVDTTIPDGDREIPVKKGDFVFPSMLKAGMDPSVFPEPEKV
KTRDPSIYRLFGHGMHTCLGAPIVNISMVQMIKQIFRLPNVRRAPGKAGQLVRFHQDVAG
TPCPIYIDAKQTIWPLPVSLSILYDLE