Protein Info for mRNA_1452 in Rhodosporidium toruloides IFO0880

Name: 9820
Annotation: K07241 nixA high-affinity nickel-transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 535 transmembrane" amino acids 42 to 67 (26 residues), see Phobius details amino acids 114 to 142 (29 residues), see Phobius details amino acids 153 to 176 (24 residues), see Phobius details amino acids 299 to 314 (16 residues), see Phobius details amino acids 354 to 374 (21 residues), see Phobius details amino acids 438 to 458 (21 residues), see Phobius details amino acids 500 to 521 (22 residues), see Phobius details PF03824: NicO" amino acids 76 to 380 (305 residues), 141 bits, see alignment E=2.5e-45

Best Hits

Predicted SEED Role

"HoxN/HupN/NixA family nickel/cobalt transporter" in subsystem Transport of Nickel and Cobalt

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (535 amino acids)

>mRNA_1452 K07241 nixA high-affinity nickel-transport protein (Rhodosporidium toruloides IFO0880)
MRDESAAAAPPLSPAASPSPPRTRRPYLPHLPRLPYRPTLLGRSVLLLAGELVANVALWV
AAACTFATNETHKGVLSLCVVAWTLGLRHGLDMDHIVAIDNATRSLVAIGQTPVTVGLFF
SLGHSTIVIAMTLAIIIATSAINKLPNVSSVGGLIGVSISASFLFLLAVINSVMLWQSLR
VVRRRKRNQAALEAQQADALAIVPVLPSSGLPPPALASPFSADSPTDHKDAQLLADEPSP
LPANQPINEKEGDLDQKAELADEEKGSHAAGELQGLPAMTCIARIGRPLFKLINRPWKMY
PIGVLFGLGFDTASEMCAPPSPVRVHNSHSTGSSLLGISALASSSPHRLPSAQLILLPLL
FTAGMTAVDSLDSVFMLTAYTFPQRVEGPTKEAEGGRWWDVRRWVLFERRLGEEEEQRRK
EEAKERMGMLRRADQDKLLGISVALTVISIVVALLISITEFMGLALEKCASCSAAADSNP
NLSGRWWRFWRAVNDNSGHLGAGVVGLFVLVFVGWGGGWWWSRRKERRRGGRAEV