Protein Info for mRNA_1468 in Rhodosporidium toruloides IFO0880

Name: 9836
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1159 transmembrane" amino acids 854 to 876 (23 residues), see Phobius details PF00172: Zn_clus" amino acids 99 to 137 (39 residues), 21.9 bits, see alignment (E = 1.5e-08) PF04082: Fungal_trans" amino acids 528 to 695 (168 residues), 50.7 bits, see alignment E=1.4e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1159 amino acids)

>mRNA_1468 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MSGLPPQPPTFYPPTYATSAALSHNWSDGVPVDGSGAPSSGRGYSDSPAFDSHQGSEAPE
AGPSGSGSGGGGGNKGKRAAEGGGEGQPPEKKKATRGARACTKCRAFKMRCTGGENGPPC
DRCKKGGHECIFEESQRGKRSNRKTDAMAKSLKSMEAKLESVLASISNPGLLAGSGGLVT
DVSQRLPPAPLDSGPFGAEGRGDVHVGVDPGVVASALEQIRSGRSGTPATAPGTSAGASR
PTLAATSGRQDSESAITRREPILLPSIAQTQGAQYDVGGGVGPYAEIGPSRTGGHPLHTS
APMAHPHPIAHPHVHHHVHFSPGTTNGHGMALPPVSSGGGGGARTVSVAGSSTSKSSPME
WSGVKDPNATDGSPRLHSLPDNTLNPLGLLAEASLRNTRKRPVDLTEEYDVTAGDDGEAN
GVAGAGGKGKGKGKGKGKGKKGTAGAEAEGAKEKGKEGEKDEGAGSGDEDGTGKKKKKEL
GMANRNYFAPGPMNILPLRRIVIEQRMPPALLEEKILSVEEVVELFALFFEHCARHCPFL
DPEIHTPAATGSRSPFLFTCICTVASRYYTKRKDDLYRKCLRIAKRVAFDVMSKGYKSTE
ICQGFLLLCNWNQPAERFEEERTYQFSGLAIRMATDLNLHRKTIAQLPPDVGEETKVLYE
RELLNRERAWIYSFIIDRSVATQMGKPAMISKEDFIVRNASVWHRQPGTMASDSGLSAMV
ELLRIVSRMIDVLYSDTRSVSGLNAHLDYLMLIRAFLQQLDQWRQDWSDPVLISSDPDNH
SLTARALMRDYYWDYYRLFLLSFAVQHALDDPASKIDLPSYCVLCFESAERMIVLLRDFF
GPQGILRYAIDSTFVYATYAAVFLLKLVSPTFASFIDEQAAMKLVRELADTLEAAAVDEQ
HTPALYASFLRMLIDNKLNGPRTATNSRAPTRPGSPVPGSMNGGIFVNDTSGMSGMHGAS
NGNTGLDSFLKSRAPSVGPEGMNGMGGNDFGINLGFPAELGGTGAFNFGGEFGGTGDGNL
DSLMVDNVLDASGFWSSMLMPGFGGASVGLSGGSGTVLSGAAGDPFSVTPFHSRPASPSH
GASTNNGAPSFSFDLPASAAPTPAASGAVAPAAEAPAPATTESAKQTAPATEVPSMQPQV
EVKQEAQAAEDGEKPTDAA