Protein Info for mRNA_1486 in Rhodosporidium toruloides IFO0880

Name: 9854
Annotation: K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1654 transmembrane" amino acids 179 to 200 (22 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 332 to 355 (24 residues), see Phobius details amino acids 360 to 378 (19 residues), see Phobius details amino acids 446 to 467 (22 residues), see Phobius details amino acids 479 to 499 (21 residues), see Phobius details amino acids 1091 to 1114 (24 residues), see Phobius details amino acids 1130 to 1153 (24 residues), see Phobius details amino acids 1205 to 1229 (25 residues), see Phobius details amino acids 1236 to 1257 (22 residues), see Phobius details amino acids 1318 to 1343 (26 residues), see Phobius details amino acids 1354 to 1373 (20 residues), see Phobius details PF00664: ABC_membrane" amino acids 187 to 487 (301 residues), 139.2 bits, see alignment E=7.8e-44 amino acids 1095 to 1362 (268 residues), 143.5 bits, see alignment E=3.8e-45 PF00005: ABC_tran" amino acids 642 to 806 (165 residues), 94.3 bits, see alignment E=3.5e-30 amino acids 1429 to 1578 (150 residues), 110.8 bits, see alignment E=2.8e-35

Best Hits

Predicted SEED Role

"Lipid A export ATP-binding/permease protein MsbA" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1654 amino acids)

>mRNA_1486 K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA (Rhodosporidium toruloides IFO0880)
MSYPPSAPSTPPRNRLPSATSPSLRPSPPRVDSLVYRSPRLGQASFDASVSPSSSPARPP
PSYSATPRQLFPDDNAVSVPMQPAASTDTLHIMSGGGAGDEKEPIRWTVGEEGEAVKPFG
ARGTPRPAPLDLSRDTANLPDLRYSIASSASDAKPSAPSKPPSVQPTLGLLFSLTTRQTF
FTIVIPGIVCAIVAGLVPPYMTQILGDALQAYTDFGLATAAPDLSHEALKAARSELLSAI
RNKAIKFAVIAAVVFFFSSTNVALWTIHGERAAHELRMKVYRGVSEKSLEWYDRGMGGAA
DGGAEGGEAGKADAAGLMGRFTKDTDDVRMGASSTVGLIIQYLSSFIFCIILAFYRNWRL
SFVVLATIPVVTFFVGLTERFSGPLANQVREATTQCSSRVDRVIGAIPTVKAFNAEEEEL
KGFKELTKKDFVAYVKLHFVWGLRSGVVQFLLMSMFVQGFWFGAYLIKTGKATAASVNTC
FWACLLGSTYLQTCIPFLVTLEKGKIAMAGLLTLIRDEPPATTATTSRSPPPSSAGTFGR
RRKAHHRKGSSFGTMTEASAFARDEKVEAKDDLSPHPFNAVASPTTPHTPVLIPLAGTTG
ARRTGAPRALKKLCPATFSGELSLRNVTFHYPTRPAPAPPALKDVSLYFAARETTYVVGT
SGSGKSTVGSLLMALYRPELGRIEVDEQGLEWIDEDWLRGHVACVSQGASVLFDGTIHDN
VAVGVVGQLQEDGTKRRQEDVTREEVVAACRGALIHDFIRDLPDGYDTWISGEKGASLSG
GQRQRLAIARAWIRDPTVLILDEATSALDATSRLLVNEAVKRWRDNRTTIVITHDLAPIG
PDDFVYVMVDGSVVEQGFRSDLEADRSGHFARLANSQQGASTVDVGDDEEEVLDLEDVHA
TPRTLGDAYGSAHSTPRIQISDADAEDVGSVRYSSPGLFFPPAGDVFRASQDLRDARRVS
ANFQNAISRSSSPSPSRPASKRFSVTDLLPPFDPTEGSGRASRPVSRANSDLSLSALELV
SAAAMSSRKPLGPRIKHRTMTEADLQKWAGRTGPTSADTIVDMAGGASSRAPTLSLFQLA
RRYWPTIPNKLLFSCGVVFSMVVGACTPISSTLLAKVISNLGNPNANSLITQSALLILLV
AFIDGSGSFLKFYCLERCAMGWITALRRRAFGLILKQDKSFFDRPENATSALSHSVVKDS
EDTRILVGTVVGQCCVLVSMLTLGIVWSFVTGWELTLVGFGIAPVIIVITRLQAAVLNKL
EGVNKLKREEVSKRFHQTLANVRAIRSMSIQPVFTRTFESTAGSAYSSGIKAAPFAGFGF
ASTFTLTYLSQGLMLYVGALLIVSGRYTFSKMLQVFTLIIFTITFAGSLMNYLPAMAKSL
RAANDLLRLLDLKPETSESEGRMTFPIHGHVSFADVRFAYPSRPDVPILRGLDFQVQPGE
CVGIVGPSGSGKSTVAALLQRLYEPSDGAVLLDGRPLDRVDVRYLRDHVAVVSQHPALFD
MSVAQNIAYGRSHVSQDEIERAAKAAHIHDFITELPQGYDTPLGDNASLISGGQAQRLQI
ARALVQSREILILDECTSALDPTNQQAVLDTILRVKAGRTTLIVTHKLAIMEKCDRLIVL
TDGAVSETGTVAELRAKPRGVFATLASGGEWETS