Protein Info for mRNA_1487 in Rhodosporidium toruloides IFO0880

Name: 9855
Annotation: K01883 CARS, cysS cysteinyl-tRNA synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 779 TIGR00435: cysteine--tRNA ligase" amino acids 17 to 671 (655 residues), 463.7 bits, see alignment E=4.2e-143 PF01406: tRNA-synt_1e" amino acids 24 to 474 (451 residues), 412.5 bits, see alignment E=1.8e-127 PF09334: tRNA-synt_1g" amino acids 415 to 485 (71 residues), 24.8 bits, see alignment E=1.4e-09

Best Hits

KEGG orthology group: K01883, cysteinyl-tRNA synthetase [EC: 6.1.1.16] (inferred from 58% identity to uma:UM02613.1)

Predicted SEED Role

"Cysteinyl-tRNA synthetase (EC 6.1.1.16) @ Cysteinyl-tRNA synthetase (EC 6.1.1.16), mitochondrial" (EC 6.1.1.16)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.1.1.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (779 amino acids)

>mRNA_1487 K01883 CARS, cysS cysteinyl-tRNA synthetase (Rhodosporidium toruloides IFO0880)
MQNSWRIPQPSAPEPKLKVDFVTKKPGIVTWYNCGPTVYDASHMGHARNYMAQDIMRRIL
RDYFGYEVNFVMNITDVDDKIIVRARQSHLLKKYLAELATSSTPLSSRVLQEVSTAWTAY
FTKAFAASLPSPVAADDFAAAEAGWAQVQDLAKDANWVEAQKTANEKFPMYFAAVEAGYT
ALKLAQKQEAAGATGLTDAEALIEANKDAVGLWLDKQLGASVTDPAVFRDLAAFWEDSYF
KSMAALHVERPTTLTRVSEYIPEIVTFVEGIVKRGFAYEGGGSVWFDTVKFEGAKGEGEG
DDEWRHTYAKLQPWSKGNRELLEDGEGSLTSTTGKRSAADFALWKSSKPGEPAWPSPWGP
GRPGWHIECSVMASAVLGEGMDVHSGGVDLAFPHHDNEIAQSEAFHNCRQWVNYFLHTGH
LHIEGLKMSKSLKNFITIDDALEKHTARQLRFAFLSQNWNARLDFKESSMQEVKSAETVL
NNFFTNVKALATEAKERSVASDGQHHYEQAEKDLLAQLEQAQLAFRTALCDSFDTPTALQ
ILLDIVSKTNIYLARGRRQVNFAVILAVSEWVTRMLRMFGLGEGSPVDGNGDKVIGWGVA
AAKGDEQSVDRESILMPYLRALSGFRDQVRQLAMSGAASSDILALTDKLRDHDLVDLGVA
LDDQEDGRAMVKLVPPEILREARDAKAAAVREKAAKKAAAAAAAEAKRLERLEKGRVPPT
EMFRSNTAEYSAWDEQGLPTKDKDGNELPKSRGKKLKKEWDMQKKLHDEFLKEQEKQSA