Protein Info for mRNA_1489 in Rhodosporidium toruloides IFO0880

Name: 9857
Annotation: K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

Swiss-Prot: 52% identical to Y1251_PYRAB: RutC family protein PYRAB12510 (PYRAB12510) from Pyrococcus abyssi (strain GE5 / Orsay)

KEGG orthology group: None (inferred from 63% identity to scm:SCHCODRAFT_64003)

MetaCyc: 50% identical to 2-iminobutanoate/2-iminopropanoate deaminase monomer (Salmonella enterica enterica serovar Typhimurium str. LT2)
Tryptophanase. [EC: 3.5.99.10, 4.1.99.1, 4.1.99.2, 4.3.1.13, 4.3.1.17, 4.3.1.18, 4.4.1.1, 4.4.1.13, 4.4.1.15, 4.4.1.25, 4.4.1.28, 4.4.1.35, 4.5.1.2]; 3.5.99.10,4.3.1.-,4.3.1.19,4.4.1.1,4.4.1.1,4.4.1.2,3.5.99.7,4.4.1.11 [EC: 3.5.99.10, 4.1.99.1, 4.1.99.2, 4.3.1.13, 4.3.1.17, 4.3.1.18, 4.4.1.1, 4.4.1.13, 4.4.1.15, 4.4.1.25, 4.4.1.28, 4.4.1.35, 4.5.1.2, 3.5.99.7, 4.3.1.19, 4.4.1.11, 4.4.1.2]

Predicted SEED Role

No annotation

MetaCyc Pathways

superpathway of branched chain amino acid biosynthesis (17/17 steps found)
superpathway of L-isoleucine biosynthesis I (13/13 steps found)
L-isoleucine biosynthesis I (from threonine) (7/7 steps found)
superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae) (9/10 steps found)
L-cysteine degradation II (3/3 steps found)
L-serine degradation (3/3 steps found)
L-methionine biosynthesis II (5/6 steps found)
superpathway of L-cysteine biosynthesis (fungi) (5/6 steps found)
L-cysteine biosynthesis III (from L-homocysteine) (2/2 steps found)
superpathway of S-adenosyl-L-methionine biosynthesis (7/9 steps found)
superpathway of L-methionine biosynthesis (transsulfuration) (7/9 steps found)
superpathway of L-cysteine biosynthesis (mammalian) (4/5 steps found)
superpathway of L-homoserine and L-methionine biosynthesis (6/8 steps found)
homocysteine and cysteine interconversion (3/4 steps found)
D-serine degradation (2/3 steps found)
D-serine degradation (2/3 steps found)
L-methionine degradation II (2/3 steps found)
L-tryptophan degradation II (via pyruvate) (2/3 steps found)
L-threonine degradation I (4/6 steps found)
hydrogen sulfide biosynthesis II (mammalian) (4/6 steps found)
L-threonine degradation V (1/2 steps found)
L-methionine biosynthesis I (3/5 steps found)
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II (10/15 steps found)
glycine betaine degradation I (4/7 steps found)
sulfolactate degradation III (1/3 steps found)
felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis (2/5 steps found)
seleno-amino acid biosynthesis (plants) (2/5 steps found)
superpathway of L-threonine metabolism (11/18 steps found)
glutathione-mediated detoxification I (3/8 steps found)
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I (10/18 steps found)
aspartate superpathway (15/25 steps found)
purine nucleobases degradation II (anaerobic) (14/24 steps found)
superpathway of sulfolactate degradation (1/6 steps found)
superpathway of L-methionine salvage and degradation (7/16 steps found)
glutathione-mediated detoxification II (1/9 steps found)
hypoglycin biosynthesis (4/14 steps found)
superpathway of seleno-compound metabolism (5/19 steps found)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.3.1.17, 4.3.1.19, 4.4.1.1

Use Curated BLAST to search for 3.5.99.10 or 3.5.99.7 or 4.1.99.1 or 4.1.99.2 or 4.3.1.13 or 4.3.1.17 or 4.3.1.18 or 4.3.1.19 or 4.4.1.1 or 4.4.1.11 or 4.4.1.13 or 4.4.1.15 or 4.4.1.2 or 4.4.1.25 or 4.4.1.28 or 4.4.1.35 or 4.5.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (128 amino acids)

>mRNA_1489 K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase (Rhodosporidium toruloides IFO0880)
MPFEVVSTSNAPSAVGPYSQAIKTDSLVFVSGCVPLVPETMKVVEGGIEEQTEQAFKNFQ
AVVEASGCKLTDVVKTTVFLQSLGDFAKVNAIYSRVFGEHKPARSCVEVAKLPLGVLFEI
EGIAQLPK