Protein Info for mRNA_1491 in Rhodosporidium toruloides IFO0880

Name: 9859
Annotation: K04513 RHOA Ras homolog gene family, member A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 TIGR00231: small GTP-binding protein domain" amino acids 5 to 159 (155 residues), 120.3 bits, see alignment E=3.4e-39 PF00025: Arf" amino acids 6 to 172 (167 residues), 26.4 bits, see alignment E=6.8e-10 PF00071: Ras" amino acids 7 to 177 (171 residues), 183.7 bits, see alignment E=3.1e-58 PF08477: Roc" amino acids 7 to 120 (114 residues), 76.3 bits, see alignment E=3.8e-25

Best Hits

Swiss-Prot: 86% identical to RHOA_EMENI: GTP-binding protein rhoA (rhoA) from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)

KEGG orthology group: K07975, Rho family, other (inferred from 86% identity to nfi:NFIA_052550)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (194 amino acids)

>mRNA_1491 K04513 RHOA Ras homolog gene family, member A (Rhodosporidium toruloides IFO0880)
MSDIRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVVVDGKRVELALWDT
AGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSGLPIILVGCKKD
LRNDPKTIDELRRTGQRPVTPQEGEMVRQKIGATRYLECSARTGEGVREVFETATRLALL
SSKGRKKSGKCSIL