Protein Info for mRNA_1496 in Rhodosporidium toruloides IFO0880

Name: 9864
Annotation: HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 609 transmembrane" amino acids 64 to 84 (21 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 190 to 208 (19 residues), see Phobius details amino acids 220 to 243 (24 residues), see Phobius details amino acids 265 to 284 (20 residues), see Phobius details amino acids 296 to 316 (21 residues), see Phobius details amino acids 337 to 358 (22 residues), see Phobius details amino acids 377 to 395 (19 residues), see Phobius details amino acids 402 to 420 (19 residues), see Phobius details amino acids 432 to 452 (21 residues), see Phobius details amino acids 467 to 483 (17 residues), see Phobius details amino acids 538 to 560 (23 residues), see Phobius details PF07690: MFS_1" amino acids 72 to 482 (411 residues), 132.3 bits, see alignment E=2.1e-42 PF06609: TRI12" amino acids 84 to 392 (309 residues), 36.3 bits, see alignment E=2.6e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (609 amino acids)

>mRNA_1496 HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473 (Rhodosporidium toruloides IFO0880)
MSKAIDSPALSQSPTLEGADDERKSALATLPSSDAPSSQANKPPAGPPGPMQQDPSLILQ
GKKLAVVFTAMLLALFLISLDQTVLSTALPRIASDFNAFDKQGWCSSAFVLTQTAFILWF
GQFLRIYSAKWTLIGCIIVFEIGSILCAAAPNVMALIWGRAISGVGAAGMFVSMIQLMAT
ITRLEDRPKLFGAFGGVFGISSVIGPLAGGGLTDHAGWRWVFWLNLCVGAPAILGCTFLL
KSSLPIGADPTKRSPRDLLHQTLRMDWIGATLVLGAVTALVYALQTGGNQKPWSDGGVIA
CFVVAGVLCVAIFFWMRFKGDTALVPPAVFRKSPASICGICGASFFNRCSLLMISYAIPV
FFQVTRHHDATKSGLDLLAYMLSVVITVIGAGRVVSATGRYWYFLVGAPVLGAVGAGLLY
TVTPSTSTAKIIGYQILCGVGTGATLQNSLFAMQAEFRNEMRLVAQATGVASFSQFLGGT
VSLAIEQAALSTQLAKNFPIYAPQAPLAIIKESPLEIYSLPSDIIPSAIFAYVKSLKIVF
VIPVAYYGLGIISALFITNISIKPPSAAKGDAKDAEEGKVAPVEESKEKAEGDVAKGVAE
GEVARSEGV