Protein Info for mRNA_1499 in Rhodosporidium toruloides IFO0880

Name: 9867
Annotation: KOG1231 Proteins containing the FAD binding domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF01565: FAD_binding_4" amino acids 69 to 202 (134 residues), 84.4 bits, see alignment E=6.6e-28 PF08031: BBE" amino acids 468 to 512 (45 residues), 34.1 bits, see alignment 2.5e-12

Best Hits

KEGG orthology group: None (inferred from 39% identity to lbc:LACBIDRAFT_396511)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (517 amino acids)

>mRNA_1499 KOG1231 Proteins containing the FAD binding domain (Rhodosporidium toruloides IFO0880)
MPRLSSWAALPLLLAAPSSLAAPLLAARQLNPKTLDSCLQNAGLSPVTTSSTNWDRDSAA
YNQRLEPTPTAILYPLSQDEISSALSCAAQSGFSVSARGGGHSYASYSLGGTDGALVIDL
GNLVDISVDSNGVAGIGGGSRLGDIYLALDKEGWAVAAGVCNGVGIGGHAGFGGFGYPSR
MWGLLSDQVVGYDVVLATGTALTNLTRDENPDLFWALNGAAPNYGIVTKYYVQAHHKPAT
AVLFSYTYNSPSTVNAATAFSSFSSFGNTSAPANLGITATIGSGSLEISGVWYGPRAEFD
GVIQPLLDELPPPDSSNVEAMSWIDSAKKLAGVDDLATNGKMLQSRDSFYAKSIMSPSTI
PVSIDVLESLFDYLWHSGKGGDTNWFVEVNTYGGANSAINNVSLADSSFGFRDKHLTWQL
YASSSTYGNPYPDDGVSFVQGMYDTVVNGMTEKGWSNNSSSPDGYAGYVNYVDPQLTFDQ
VKNLYWGSQYAKLSALKAQYDPQQLLNRPQGIQPSSS