Protein Info for mRNA_1502 in Rhodosporidium toruloides IFO0880

Name: 9870
Annotation: HMMPfam-Fungal specific transcription factor domain-PF04082,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1167 transmembrane" amino acids 487 to 505 (19 residues), see Phobius details amino acids 520 to 538 (19 residues), see Phobius details amino acids 545 to 561 (17 residues), see Phobius details amino acids 567 to 587 (21 residues), see Phobius details amino acids 608 to 626 (19 residues), see Phobius details PF04082: Fungal_trans" amino acids 540 to 698 (159 residues), 29.2 bits, see alignment E=2.5e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1167 amino acids)

>mRNA_1502 HMMPfam-Fungal specific transcription factor domain-PF04082,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MSDQHYRWEQRPQYAGGYDRSAPRPTSYHEQQYAAYDFARHPPSTASAPLPEYRPQAGQF
PPPAYPSSHSSSNRSRSSSAEQQGVPSHAPIHSTYVIPSQHAGHHHTHSQETISPSSIYQ
HQVSASPAHYSPPTPLVDTFPPGTFSRPASRSDYAPAPLRRAPSFPNSRNGGSSLPAGLV
SNVDTWTGTDASASTSSLDLTGPPTIELSRPPASRKKSTTAAATEKQAPRRRVPASCTPC
RKKKLRCNRSMPCSSDAVPLYTVRQENDVKELKAQVDRLQHLLDALSRAPPHAPRPDPPV
APRVVVRPKEAPSPPHPRFDLNAQDLCGALSGLALTGPVPSHQSVGCESFAPGGTSGAAF
IYDAGRFLSANEKKRPSLPTTVLTPTSGVPSPPFSGATSPEQSTAALSPSPVALNAAFLN
VRPTMSQVLELLPSDAELTATYKFYASYIHSLSSPISLGAFEHRWPAFRAALAQPDAASR
EKDVDPFFVATLLGACATGLASMTIEQAKSRGFPESRAHIVGRWIHAAMLSLVAGKFLEA
PTVDGVRAAVIIATIYIELFITTDETVSAGVSLLSLAVNAVFALGLNRDPANKSASPLSF
FECEERRRLFWSVFSLCGSVTTGLSRKWPQFDLRQMDCKFPLDCYDSELLMDERAAKARV
RARQGNEQPEETPMTAPLLRAQYALLVKKITDKAFSVEPCSYSDVLALDAELRAFEASFP
LVYRLPIDTTGRVRFANPPSMTEDRAALLHLCLAAEFVRLHRPFLVLAATDESYQHSREQ
CVKYAKRLLAINATPGCRLNWAGHTFKVLSGAVALAVELLQSPGEPDAPMIRSALNGVVN
HAEGPMAASVVCRKTSSVVRFILAKVDEEAASSSHPRTAKRARTLFYNPDDLRNQRRSLA
QTLGGAPSNVSSRSNSPELGERRRKLCRPPLMHVASDTIVPQATATSQAVAGQTAAIIRR
NSRSRSVDEAFPTVSALAETTAQPIEFDQQSITSPMRPVFAGYPVAPPARQIAKLGGTFS
RGMSRNASPAVSSGTGTSGGSVPAMSSPEMGMTLQIPLANNPLAGSPSFGSMDPLSSAST
TGHFDFAELTLTGSAGPPTASMIDERAGGTFFTLPATALGIDVSQQSDYSPTESGIAIGG
GNGLASGEGGRSRFNEPMEDLDAFGAP