Protein Info for mRNA_1504 in Rhodosporidium toruloides IFO0880

Name: 9872
Annotation: K11251 H2A histone H2A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 PF00125: Histone" amino acids 21 to 106 (86 residues), 63.7 bits, see alignment E=2.4e-21 PF16211: Histone_H2A_C" amino acids 107 to 132 (26 residues), 44.2 bits, see alignment 1.3e-15

Best Hits

Swiss-Prot: 66% identical to H2AV_CAEEL: Histone H2A.V (htz-1) from Caenorhabditis elegans

KEGG orthology group: K11251, histone H2A (inferred from 74% identity to cre:CHLREDRAFT_187884)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (159 amino acids)

>mRNA_1504 K11251 H2A histone H2A (Rhodosporidium toruloides IFO0880)
MSTVQGGKTGGKGGKGGKGGKAGGDNKNQSTRSQKAGLQFPVGRIHRYLKARTQNNMRVG
AKAAVYASAILEYLTAEVLELAGNASKDLRVKRITPRHLQLAIRGDEELDSLIRATIAGG
GVLPHIHKNLIKSPAELQGGQMPIGKPMNPMGAPQVHQG