Protein Info for mRNA_1515 in Rhodosporidium toruloides IFO0880

Name: 9883
Annotation: HMMPfam-Up-regulated During Septation-PF15456,SUPERFAMILY--SSF57997

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1001 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF15456: Uds1" amino acids 174 to 299 (126 residues), 97.1 bits, see alignment E=4.7e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1001 amino acids)

>mRNA_1515 HMMPfam-Up-regulated During Septation-PF15456,SUPERFAMILY--SSF57997 (Rhodosporidium toruloides IFO0880)
MRRIFGGTSLTGSSTSGSLASDALSSPISTTHDRSSPPATPTSEYPPGTDAHGEPKKGWF
GGLGGGLTRSGSGKLTRSDTVSTTASASGQTGNSSSMTLQPAPEDFEPERLPFGQARSPP
PPTSPDRGHTRSSSHSSFGTALSPRSAGANGRPFSPEAALSASTSAVQKDSLMIELLSGA
AVVEAKDYDILSWEEMQELNKEHALLATRLTSLNRSVALETRLRDSAAKLVRLSAPASTL
PPSNPGSPARPRVTREQAEAQLATAQAKLDTLETDLRKQTARDAELQGRLLRHTASVLAT
ALRKKEEEIQQATAIQPALPVPSSAHRDTPSPPGSATLPRFDGAHFFAGNREAIVPLPRA
NGSPYASPQLGQSGTFGANAVQLQHDLAEQTGKVKELEGQVADLERALDATKQQAEEEIR
AVKGDLENVETRASQEQAGAQERIRTLEEEVERLREEVDQARADHEHARSETDDARREVE
EHRTQLAAFQGSSGDAQRDLDTAKQEAQDSSRKLRDMGMELAEAQHKLEEAEDRVKELEE
ELQRTEEEIAAERREWEEKLKAAEAGAASAPSTESQPANDGAAEARVRQLELERQTVVQS
IGDVPRRHRMRPTLGVALRESPAVDDTTERDDLPAYLSSTLDSHFDKLTSHVNELNSLRD
EHDTGRSDLEAELDQAHERCQNLEADVASLQAERDSLETELDLLRSQSQEHETRIASLST
LESQLEEAKAAESRGREELAAAQSRIAMLEGQLGEHDKAFSRLQDLWQSMPSLDESSPRS
AAATLPGRKQLGSLFKKGGNTSTGAASSNSADYSVDNLVERVRSLSTEHQQLTQRLAVFE
EEKGLAEESRKKSADTQAGLEAKVKELEERIEVSAKQEVSMLERLNDLTESLETTRAEKR
KLETQIRTLEADKAALQEKVEAATAQPAPAPSASAASSADEGELQELRDQISDLEEELAD
VQKREQRTRAQLLEELSTVQSEVSSLKTQLRQAQRKLGAKA