Protein Info for mRNA_1526 in Rhodosporidium toruloides IFO0880

Name: 9894
Annotation: K02880 RP-L17e, RPL17 large subunit ribosomal protein L17e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 TIGR01038: ribosomal protein uL22" amino acids 24 to 166 (143 residues), 169.9 bits, see alignment E=1.7e-54 PF00237: Ribosomal_L22" amino acids 32 to 165 (134 residues), 123.1 bits, see alignment E=2.8e-40

Best Hits

Swiss-Prot: 54% identical to RL17_DIACI: 60S ribosomal protein L17 (RpL17) from Diaphorina citri

Predicted SEED Role

"LSU ribosomal protein L17e (L22p)" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (194 amino acids)

>mRNA_1526 K02880 RP-L17e, RPL17 large subunit ribosomal protein L17e (Rhodosporidium toruloides IFO0880)
MADSGVLGLSRGTSAKYASQHLIKDRKAVGISKGSYLRVHYKNTRETAAALTGLSLAKAV
KFLEDVQTHTQCVPFRRHNGSVGRTAQAKVHGVVQGRWPVKSAKFLLALVKNAQANAEVN
GLDKDELFVKNIVVQQAPKMRRRTYRAHGRINPYQSSPTHLEVILAPYGAEVPAASEESS
QVEAIEACTSIRAS