Protein Info for mRNA_1530 in Rhodosporidium toruloides IFO0880

Name: 9898
Annotation: K15296 NAPA, SNAPA, SEC17 alpha-soluble NSF attachment protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 PF14938: SNAP" amino acids 4 to 282 (279 residues), 350.6 bits, see alignment E=7.1e-109

Best Hits

Swiss-Prot: 53% identical to SEC17_COPC7: Vesicular-fusion protein SEC17 (SEC17) from Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)

KEGG orthology group: None (inferred from 53% identity to lbc:LACBIDRAFT_181307)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>mRNA_1530 K15296 NAPA, SNAPA, SEC17 alpha-soluble NSF attachment protein (Rhodosporidium toruloides IFO0880)
MSSQGDQLRQKADKKASSSSGFSFFSSSTAKFEEAHDLYQSAGNAYKMDNMHKEAGDCFC
KAAEMALKNDEKDDAANDFWTASKSYKKSHPELAVAALQRTIQLYKEKGRFRQAADRHKE
IAAILQQEGGDMAGALEAYEAAGNIYSNEDATASANACYKEAAEIAATLGQYPRAIEHFE
KVAQQSLGSALTRYGVKEHYLKAGMCWLATGDVVSTKRAIDNYTSADPSFATTRECQFLN
GITEAFDAGDAEGFTAHVAEFDRLTRLDNWKTSLLLTIKRGIAEEPSLT