Protein Info for mRNA_1537 in Rhodosporidium toruloides IFO0880

Name: 9905
Annotation: K05284 PIGM phosphatidylinositol glycan, class M

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 94 to 113 (20 residues), see Phobius details amino acids 125 to 143 (19 residues), see Phobius details amino acids 151 to 163 (13 residues), see Phobius details amino acids 171 to 199 (29 residues), see Phobius details amino acids 211 to 234 (24 residues), see Phobius details amino acids 284 to 304 (21 residues), see Phobius details amino acids 310 to 336 (27 residues), see Phobius details amino acids 347 to 367 (21 residues), see Phobius details amino acids 379 to 402 (24 residues), see Phobius details PF06728: PIG-U" amino acids 69 to 251 (183 residues), 45.1 bits, see alignment E=1.2e-15 PF09594: GT87" amino acids 76 to 241 (166 residues), 24.9 bits, see alignment E=2.5e-09 PF05007: Mannosyl_trans" amino acids 143 to 402 (260 residues), 237.8 bits, see alignment E=3.1e-74

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>mRNA_1537 K05284 PIGM phosphatidylinositol glycan, class M (Rhodosporidium toruloides IFO0880)
MRLPRAVGLAVALRGALLLWGSYQDAHSAVRYTDVDYFVFSDAAACLVDPARQHCGRAKG
VWAPDWLGDPYARATYRYTPLLAFALAPNSLLHPAFGKVLFAMCDLLVGVMLYKLMRRRG
ASRKYAGRAVAAIWLLNPMIANISTRGSSESIVGALVVAVLSLASEGRWDAAAAVFGAAV
HVKIFPFMYGSSLVAALYSSTSDKKVAMTRLVRFGVLGFTSFMLLNAACFVFFGKPFLQE
TFLYHLSRLDHRHNFSPYFYSYYLSLSPSPQSTSSPLQLLPRHPLAAFLPQLALSLGLGF
LFGAQDLPYAWLVQTFAFVAFNKVCTSQYFLWFLWLLPPALPRLSLSLLRTILAAVLWVA
GQAIWLSQAYRLEMLGEPVYREVWLAGIVFLVIQTWVLRELLVAYTGPGRGRSGEGRQEG
AKEL