Protein Info for mRNA_1538 in Rhodosporidium toruloides IFO0880

Name: 9906
Annotation: K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1181 PF12584: TRAPPC10" amino acids 1055 to 1165 (111 residues), 63 bits, see alignment E=1.4e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1181 amino acids)

>mRNA_1538 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 (Rhodosporidium toruloides IFO0880)
MAKQVSIAYEALPAAKDYEAIRADVERQIPLRNLHWVRSSSANRTIRTIQTLPLDVRPLS
SFTGATELLERPYLNLLFVVCDDNEAYRATVRTQIREWLDSVTAKYHQEWLIVHVTSGKG
SGAKFYQRKSAIVDKIKADFNVGKKDRCIQVVQGSSADDPTAWAEFLTKVKEGLIATFDS
NVALYEESVRKADSQRQLSGWQFLPFFRQKEALADSFEAMTLYEDALIQYDELEASFFQV
SKEHAQAPWFRILGGVSSGDDALPLLSTTNKPYRNLIEMDAITIFDFRIYLFARQAVMLF
HLGRVVEVARRGAYFVSTFARKLREHQSTLGPNFVEAWTYSACLNIVSECGRRIDQDLSD
PAATGFVAVKAELLELAKKQLDKLGMGAGHLPSTHPFSMSFNESSASTVSSSSASSPTSP
TPPNRQPVTRKDLLDAMDKREAFDKLYVELTQRSLQAYQASGRRRCAAKLNAYLAALEQC
RERLPTAQKLFSQLPTTYTDLRWTAIESYLLSQCTSLQESLDMPKDRLLSTLALVRSGVS
VGSKEWGLEPVLDHVVDWKRQNAELAKKLTDDVYQLSATLSKDFAAVAFPTFLIRLKDGS
GGRPVDEDGVTATVLVRNILPCDVRVDEVRLKLATMEGEQVWLTAGACTLAPGETPVTVF
CPTSVTGRLTLELSQLRFSRIIFQYSHRPVSTRNLAPDPRQVPVTDKQPAIFLPPDQQAV
HIFVEEPNSVALDRQRRMILNVDPGRNTVSRITVRLAVVGQDVHFATTAAEGLDGIAFTA
DADDALVLQDLAPYTPIRVAIPLTGNIVDPNVQAEYTTSRRPHTRRSLRRTMTYSVALPL
AVNVQDYFREDCSLLSKFSVTTDGVHGLKVKSATIAAPPSVEVKPCRARSDVPVIISPLQ
TANFLFKLQCDRPTEVQDPLQLVLTYASIEERLRFQVRAVVDRGIDGAGLHEHRRWIIEA
FLSEALASTDLERYCSSESLNHLAYEEATWKKRLDLCMVPTTAREPVLSTVQAIYEELRS
AGGVVDVWRTLEIPLDLPALNVLNLVEITPALSRTEVGQLVPATLTIRPSFRWSRTPVSN
TSPIRLAYSVVANASEWIISGRAKGEWVAQDGEEIVVQLGLVPLRAAAIFLPSVVVQPVQ
DGSASHELVSCETQHVTAATAVEVLPITHRTTFEIAVPLAV