Protein Info for mRNA_1540 in Rhodosporidium toruloides IFO0880

Name: 9908
Annotation: K02870 RP-L12e, RPL12 large subunit ribosomal protein L12e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 181 PF03946: Ribosomal_L11_N" amino acids 9 to 69 (61 residues), 84.2 bits, see alignment E=4.4e-28 PF00298: Ribosomal_L11" amino acids 74 to 145 (72 residues), 60.1 bits, see alignment E=2.5e-20

Best Hits

Swiss-Prot: 72% identical to RL12_HUMAN: 60S ribosomal protein L12 (RPL12) from Homo sapiens

KEGG orthology group: K02870, large subunit ribosomal protein L12e (inferred from 84% identity to ppl:POSPLDRAFT_114969)

Predicted SEED Role

"LSU ribosomal protein L12e (L11p)" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (181 amino acids)

>mRNA_1540 K02870 RP-L12e, RPL12 large subunit ribosomal protein L12e (Rhodosporidium toruloides IFO0880)
MAPKVDPTEIKIIYLRATGGEVGASSALAPKIGPLGLSPKKVGEDIAKATGDWKGLRVTV
QLTIQNRQAAVSVVPSASSLVIRALKEPPRDRKKEKNIKHTGNVELDTIIEIARTMREAK
KTLSANLANGVKEILGTAQSVGCTVDGRPPHDVIEAIDSGDVEIPSEVRSAPSPPSSTTR
H