Protein Info for mRNA_1544 in Rhodosporidium toruloides IFO0880

Name: 9912
Annotation: K08745 SLC27A1_4, FATP1, FATP4 solute carrier family 27 (fatty acid transporter), member 1/4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 639 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 118 to 137 (20 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details PF00501: AMP-binding" amino acids 61 to 509 (449 residues), 233.7 bits, see alignment E=3.3e-73 PF13193: AMP-binding_C" amino acids 526 to 591 (66 residues), 24.7 bits, see alignment E=3.8e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (639 amino acids)

>mRNA_1544 K08745 SLC27A1_4, FATP1, FATP4 solute carrier family 27 (fatty acid transporter), member 1/4 (Rhodosporidium toruloides IFO0880)
MALPALGPAATALAGASSFMYLDALWRMGEDYKLARGIVKARIALALNNRRDRNSIYYVF
DDAHRKRGDADCYVCDGVTYSWNQVALEVNRLAHWFLSQGIKRGETIALYMPNKPAYPIV
WLACLAIDIVPAFINYNLTGQGLAHCINVAGPRLVLYDSDYASPIGEISSSLSEKNPGIT
FVRWCDRFNTGVGEKAQGGVDGEVRLDEAVLRQMSEKRIPDERRNGVTWQSPCCLIYTSG
TTGLPKAALTLHGRCSTAFKVWTSLNEFDKKTRIYTPMPLYHSTAALLAVGVAWNAGATV
VIGRKFSASSFWKDVRESRANVIQYVGEVLRYLLSVPPSIADKDHEVRLAYGNGCRPDVW
EKFRERFGVQVISEFFASSEGNGSLFNHNGNKFGAGAVGKEGMIVGTFQRNKQVLLRVDP
LTEEPARGKDGLCIRAAVNEPGELVIQIDNTSPYQAFAGYHNNPEATNKKIMRDVLSKGD
TYFRTGDLLRRDADGHWYFADRLGDTFRWKSENVSTSDVAAALGEVVKEANVYGVLVPSQ
DGRAGCAAIPKSAGPVDFVMLSKHVSKTLPKYAQPLFIRLVDALESTGTGKQLKVTLRNE
GVDPDVVRDPVFWLHPDKKAYVPFTKEDWGLLKAGKVRL