Protein Info for mRNA_1547 in Rhodosporidium toruloides IFO0880

Name: 9915
Annotation: K14402 CPSF2, CFT2 cleavage and polyadenylation specificity factor subunit 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1010 transmembrane" amino acids 73 to 92 (20 residues), see Phobius details PF16661: Lactamase_B_6" amino acids 18 to 129 (112 residues), 44.4 bits, see alignment E=2.6e-15 amino acids 212 to 312 (101 residues), 57.6 bits, see alignment E=2.5e-19 PF10996: Beta-Casp" amino acids 361 to 480 (120 residues), 54.6 bits, see alignment E=2.5e-18 PF07521: RMMBL" amino acids 718 to 780 (63 residues), 27.3 bits, see alignment 5.5e-10 PF13299: CPSF100_C" amino acids 797 to 1004 (208 residues), 112.7 bits, see alignment E=4.5e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1010 amino acids)

>mRNA_1547 K14402 CPSF2, CFT2 cleavage and polyadenylation specificity factor subunit 2 (Rhodosporidium toruloides IFO0880)
MSITITPLSAHPLPPTYLLTVDNAQILLDCGSYDKGREATLPSTSTSSALTDEPTSEQVT
EYLSILRKLAPSLNLVLLSHPLLTSLGLLPFLRARCGLRCPVYGTLPTREMGRYAVEEWV
EARSAAEKNEIRYEALEQAVGASKRKDAAVAHAAAAKKRKGKAKVEVAEVGVGEDVMVVM
EEEVDGDTDMKDGAVVKQEDGDKARDPWSDAWKLTTQEIRDAFLAINAVRWTQPIHLTGP
LKGYTLVAHRSGHTLGGSLYTLRPSLSSSLSPASSASSLLYAPLFNHVKEHHLDPTSLLN
AGNVDDNFRRMGVMIVGAERSKVVNIKRIDRERKMLDLITSTLQAGGSILLPTDPSARLF
ELLILLETHWQFANLGQQFPLCLISRTGREAVGFVRSLTEWMGGQIAGSGADKLKFANLR
IFSSLDEIATTIPPSVPKLILTVPSTLSYGYSRALFLDFARNAANLVLLTGLSEPGSLAR
WLAREVWEPQQEKGCKYGEGKVGKEVKMDQTIELEIKRKVYLEGDELEAHLAAEREAAEL
VARQQAALERSRRMLQDNAGGDSDDESDSEGEEADAAEEANGAAVDEDQPMPVRRRRLGG
FTGGAGAWDEFLDAETLSGSAGGQVFDIYVRGSYGVRSAAGGLPRFRMFPVVERKRRVDA
YGEAIDVEGWLRRGQDDDPLSPNNAQVLGKRAREEEKEPEPEEKPDPPHKYVVDRVEVPL
QALLFVVDMEGLSDGRALKTILPQINPRKLVIVDGPSEAIQDLAGACKAVTSMTEDIYTP
SLGETIKVGEETKNFSIRLGDSIMATLRLSRVEDYDVAYVSGIVHIDPESDLPVLERPTF
ADAASAPSALPAPDGTDTTIASGDGGPAPTEAEQADAEEGASEEPADPSILPALKPSLFI
GDLRLALLKERLAALKVPSEFTGEGILVCGPAPPEAFDFDFSGAASRAGIDTRKGAKFVR
DALLNEAMEASGGRVAVRKVGRGRLVLEGGPGETYFVVRRAVYALHAQAG