Protein Info for mRNA_1554 in Rhodosporidium toruloides IFO0880

Name: 9922
Annotation: KOG1611 Predicted short chain-type dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 PF00106: adh_short" amino acids 5 to 137 (133 residues), 49.4 bits, see alignment E=8.3e-17 PF08659: KR" amino acids 6 to 112 (107 residues), 41.4 bits, see alignment E=3.1e-14 PF01370: Epimerase" amino acids 7 to 79 (73 residues), 22.1 bits, see alignment E=2e-08 PF13561: adh_short_C2" amino acids 10 to 154 (145 residues), 40.4 bits, see alignment E=5.4e-14

Best Hits

KEGG orthology group: None (inferred from 40% identity to mgr:MGG_02798)

Predicted SEED Role

"Short-chain dehydrogenase/reductase SDR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (277 amino acids)

>mRNA_1554 KOG1611 Predicted short chain-type dehydrogenase (Rhodosporidium toruloides IFO0880)
MVASVAVIQGAGGSIGSHLARHLLTRSSLSIVGTSRDPSSAKRAILSGLEGQNVDESRLK
VFEVDVREAETVRKAAQEVEKEFGKKSLRLLINASGVLHADKSIREIDSQTLLDSFHLNT
FGHLLTFKHFYPLLPQKNDIRNSSSSSSEGEDPANGVVQPGLGVLASLTARIGSIGDNQK
GGWYAYRASKAAANQVIATLQRELSLRSTPSIAVALHPGTVVGTNLSKPWTKEEDAGKKE
GVHRADEATGKLLDVIKGLSEQDGGRFLDYAGKEIPW