Protein Info for mRNA_1555 in Rhodosporidium toruloides IFO0880

Name: 9923
Annotation: K18703 SUGCT succinate---hydroxymethylglutarate CoA-transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF02515: CoA_transf_3" amino acids 31 to 427 (397 residues), 432.7 bits, see alignment E=6.6e-134

Best Hits

KEGG orthology group: None (inferred from 60% identity to cci:CC1G_15019)

Predicted SEED Role

"L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16)" (EC 2.8.3.16)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.8.3.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (450 amino acids)

>mRNA_1555 K18703 SUGCT succinate---hydroxymethylglutarate CoA-transferase (Rhodosporidium toruloides IFO0880)
MLTRSPRRLLAPYARLLSTQAAGGAGMPPPLKGVRVLDLTRVLAGPYATMMLADLGAEVI
KVERPQGGDDTRAWIPPSAPLIETPPTPPPSPTSSSTPQIQPDNWNDLPPESAYFLQANR
GKRSLGLDFKKEEGKEVLRELVRRADVLVENYVPGKLAEMGFSYEHCKALNPRLIYASIS
GYGQTGPFAQNPGYDVVIEAEAGLMHITGEPTGPPVKVGVAITDLTTGLYAKSAILAALL
SRAQTGQGVHIDANLFDSQIASLANIASNYLIAGREATRQGTAHPSIVPYQVFPTQDGFI
MIAAGNDSQFKKFSALVGQPHWSDSPQFSTNSSRVSNRSTLIPLIESALSSHPTSHWLKL
FKGKGFPFAPVNDIKGTFEHPQTRERDLVREVEHPRAGKIKLVAPAVQYNGKRMEFTRPP
PVLRQHTVEVLRELGYSDGKIATLQQKGVV