Protein Info for mRNA_1562 in Rhodosporidium toruloides IFO0880

Name: 9930
Annotation: K17770 TOM20 mitochondrial import receptor subunit TOM20

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 transmembrane" amino acids 13 to 35 (23 residues), see Phobius details PF02064: MAS20" amino acids 21 to 154 (134 residues), 134.4 bits, see alignment E=1.4e-43

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (269 amino acids)

>mRNA_1562 K17770 TOM20 mitochondrial import receptor subunit TOM20 (Rhodosporidium toruloides IFO0880)
MDSYSPSSSLRTGLKIAGAVVGTIAVGTVAYAAYWDHKRRTDPEFRRKIQREHKKLEKKV
KQKQEVGKEQVKAALTRALALVNAEKVPETAEGKEQFFMEQVALGEQLAARSPEFYVASA
ISFYKALKVYPAPQELLMIYQKTQPPAVFDLVMELISLEINAAASAASASSGPSSSSTEP
LLQEVEGPSGSSSTTAVPAAAGSENGEDSSPSSGGSFVHVETDAVVTPGGDVAAEETTAI
VADIEIEQAGEEAPAISSEEIDPPEPTLA