Protein Info for mRNA_1565 in Rhodosporidium toruloides IFO0880
Name: 9933
Annotation: KOG1860 Nuclear protein export factor
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1461 amino acids)
>mRNA_1565 KOG1860 Nuclear protein export factor (Rhodosporidium toruloides IFO0880) MSWNGPDPFASSSNPTSSSSTSRGGFRTSSSDWVPRGGFQGERGRGRGRGTGRGGAGRGA GGPGVKRHTNLSWRRPADDDAGAQDGQDVDDEAAEAGATADAPSAFAAFGAEGGGFGGFG AAPAASSAFGTTESSTSAFGSAPSAFGTAGSTFGSAFPSASTSTAFPSAFSAAPVQPTPP SVPLFRQESQQSEEATASQDEADKGKQRANGQISTLEVLGEDSEARRKRFESTLPNNRYL ELKPLREEQRLKAIKAGLIPDPSKPMRLDQATDFEGTCEEMCPEWEREEREYQNNVDPLE RYPGTTRIDPVRAVKAFHRPAAGNDQPLPSDVRPPPVLHRTLDYLFHTLLPQHPLAVTHP FIRDRTRSIRQDFTVQNVRGRSAIECNERIARYHILAVGTLREQSGFSESQELEQLRKVL KSLNEFYDDARTSGNPSPSPNEAEFRAYNILTHLRDPDIIWSCELLPPSIFSHPLLQRAL AIHRLAQKSNIARGERASQNAFSRFFKLVAAPETPYLFACILSTQFNDVRRNAVDALRMA FLKQHSAFPLRTLATVLGCDDEEDARSVCEQLGVVVRADERGKMVAELHKQAVLKIATLK PKVSMRLVEGKRGETSYQAVIDGGDYSSADVEAIPATPAVASQSTFSFSAAPPATSASQS LPSPTSTLAPPAFGVTSSSPLPSPFATPPFGTSPVPPPAASTSTGLNATASPFVPSFSLP RAAAPPAPPPATTAAAPLPTFSFAPAPPPALSAPAPPAFPGPAEPSALRPAKRLPPSSLR TAVTAPSFTPSPAPPTLPKTIPSPRRPSATSPIAAKGLRRVSLPRAASPATTVAAAALAR RQALVDSLVRDLTAEMLVTAVVAPVQRASAAVLKERWADVKAKEREAKDALAQRLADQAY DELASLAAREAILDAVRQQRSQRRSLERWRRATKRSLVHKAEERARRKEWEEVVGTIERR KATRAEDEEAMSDDDELDEMEDEEDDGGLAGLADAGLDFGGLSLGAARQSDKPRDAVDDD LATKLRMAAETRERIWSRGTFLNILSQHASAALSSHRLPFRPTWSTLVSTADTESPFGAW LACKFDIRQESGLAEIDTPNIDVEVRLLGERRQPIESELRTTGLVMVDCTRPKGSPVDWH VARQRLNYLVGQVVQKSLFKPALLVILCPDRAMSEEEEAAMKAELAEKLQLNAFADVRSW AVDLMHLDGAESSFDVETAKLLFPVIVRNERIPRPFSSFLNPLVEVWRASLARTCKVVHD SSAARDLTTSYLRQLEDIITRSEAVASPPPRAKLILPDFPTDTSLRTACAAFAALPDFQS SGNFPDLAILLAQQPPASELSLARVLLEHLAVFVLETLSPMKTLQGSLDSDLPDAIENVK SALATLEDRLRPAPPVLTPRKKRRASAAPAETNSPKKQVGVNGIAGEEKGLTNGRGQLAK PQDRLSALEGLMKDARALLAR