Protein Info for mRNA_1570 in Rhodosporidium toruloides IFO0880

Name: 9938
Annotation: KOG2533 Permease of the major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 481 transmembrane" amino acids 48 to 68 (21 residues), see Phobius details amino acids 88 to 109 (22 residues), see Phobius details amino acids 118 to 136 (19 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 210 to 232 (23 residues), see Phobius details amino acids 280 to 305 (26 residues), see Phobius details amino acids 316 to 336 (21 residues), see Phobius details amino acids 345 to 364 (20 residues), see Phobius details amino acids 370 to 391 (22 residues), see Phobius details amino acids 403 to 424 (22 residues), see Phobius details amino acids 436 to 457 (22 residues), see Phobius details PF07690: MFS_1" amino acids 56 to 420 (365 residues), 123.3 bits, see alignment E=6e-40

Best Hits

KEGG orthology group: None (inferred from 50% identity to cci:CC1G_09841)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (481 amino acids)

>mRNA_1570 KOG2533 Permease of the major facilitator superfamily (Rhodosporidium toruloides IFO0880)
MSLTPDSTSEKQHIEQKEFASRQPTNLDAEGQSVDPAFAKKTVRKIDWNLIPILSALYCI
SLIDRTNVSVARLLGMAKELKLTVGERYSIITLIFFVPYIIFELPSNLIIRKLGPRNQLA
AITVLWGSVMLGMGFVKTWEQLAVCRVLLGVLEAGFFPGCTFLISTWYLREEAGRRMAWF
YLSSMVVSGFSNIMGWGIGQLSGKHGYLGWRWVFIVFGAITIGLGIISWFIIVDFPDRAK
FLTDAERKYAVDRVNADRGDALPDGATAAKVLKHLADFKIWLFGLCFCFATTGSYAFAFF
LPVILAGGGYDTKTSLLLSAPPYAAAAIYTAVVAHYSDKTRRRAPFIAGSAILCSVGLLI
LAYAKPLGVRYFGAFFTIMGCQSNVPGVLAYGSTNVLSHSKKAVNSAIIVGLGGVGGIMA
STIFRQADYPKYIPGLWGTIGCQWATCIILVGLSFYFKRQNAKADRGEHVIEGNPSFRYT
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