Protein Info for mRNA_1573 in Rhodosporidium toruloides IFO0880

Name: 9941
Annotation: KOG2022 Nuclear transport receptor LGL2 (importin beta superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1059 PF08389: Xpo1" amino acids 128 to 265 (138 residues), 28.3 bits, see alignment E=8.7e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1059 amino acids)

>mRNA_1573 KOG2022 Nuclear transport receptor LGL2 (importin beta superfamily) (Rhodosporidium toruloides IFO0880)
MDPDLTQVIQAIQALYNPSTPPSLQSTLQHSLTQLQHSPHAWSLVGPLISHEDPAVRFFA
ASTLGEKIARGWGEVEPVQEVGNSRGGDGELSGPAKELKDSLMGWLAKSAVGAFPPTSSV
AQPVQGEKPVLRKLTAAATALSLRLQDRWRDWLLEVVMRVAASGARREATLEVLSTAIEQ
VARAELVGSKRMAYMSSLSSTIPHIVSTLSSSLSPPSSPAEIDSAFSCFVSYLNAGQISS
SELTTLYPLFLPHLSNPATVVAACGAIEELVERSSGLSETGGSGLTRFINRQRTTELING
WVTSPFVQHVFSQAISDAREGSEPDEEAPAVFKLVASLADHFITTFLFDPPPSSSITDPS
TVLSLTHPAIHTLLSLLIALSSFPGHTSESYLINELPCSAWMNLQELGADGEGMVSGEGE
GREGRYGKEKDWEVYRGVFVALAEGLRERATRPGEEEVKVWPKDVREAFRQYRSTTLAET
AQNAYFVLRDDMISGLVQLAAQQVSQPPSPGQDSYEDLEASLFILFSIGEAVPLSPSLDD
LVPAAPPSRLSQNLSLLFGPSILGRLPSQSGSYPSLRSTALRSVGAYSAWFSSNPDACLQ
AVSFVVSGLQEPDLVPGAARALKGLCDANRKVLVGHVASFVQVLGNLEGRIDDAELAKVL
ESVASVVQALPEAQIVEPLLTLTNPIIGKLSSAAEGNASAPNEDPREVCVQQLSYLSALA
KGLSDPEDDLVDLDVSFEETTSARDAAFRILRDPRVVDMRRRLAQAIEAAARRWPSDTEV
VTALSDYIRHSTSDSVPSSLALDSLDLLNFCSSALQLAPSSVWLGIEGQLLARLARDRTD
AEMSDDQLAKVGQPIEGALNVVLSTHGEVAAMAENPDVVAAFLGLCCQVVRLYPRIFTVL
PAHYLDAVLAFAERGLAMQEQFSLKATIELLLSSVQQTKMASSSCTAFRSALIPRVPSLL
RALMAGIGGNVPRSHLTQLSELLHACLLRLAEQARPTLHDLLEEPGFPSERATPEAKSRF
GRAILSARTGKQVRQAVSAFALLCRGLDGSAYGAATHLY