Protein Info for mRNA_1574 in Rhodosporidium toruloides IFO0880

Name: 9942
Annotation: K06867 K06867 uncharacterized protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1663 transmembrane" amino acids 1180 to 1198 (19 residues), see Phobius details amino acids 1617 to 1635 (19 residues), see Phobius details amino acids 1641 to 1661 (21 residues), see Phobius details PF01833: TIG" amino acids 938 to 1021 (84 residues), 39.5 bits, see alignment 1.5e-13 PF12796: Ank_2" amino acids 1176 to 1239 (64 residues), 39.8 bits, see alignment (E = 1.7e-13) amino acids 1181 to 1267 (87 residues), 38.9 bits, see alignment 3.3e-13 PF13637: Ank_4" amino acids 1179 to 1230 (52 residues), 32.4 bits, see alignment (E = 3.4e-11) PF13857: Ank_5" amino acids 1196 to 1250 (55 residues), 53.1 bits, see alignment (E = 8.5e-18) PF13606: Ank_3" amino acids 1209 to 1238 (30 residues), 25.7 bits, see alignment (E = 3e-09) PF00023: Ank" amino acids 1209 to 1238 (30 residues), 20.5 bits, see alignment (E = 1.5e-07)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1663 amino acids)

>mRNA_1574 K06867 K06867 uncharacterized protein (Rhodosporidium toruloides IFO0880)
MDYEAAQAHSGMHDYDPDAHFDSSSSSGGDGGTSSPSDGSSPAYSAASQQEWALDLGLTM
PWTAASPAALGGMAAMDPGFVASQATTASGGAFKLAARHGQGGNGTGTDGLALTGDFWSA
APGQEALSPSGSAGGHQQDRDGAQRATDYFGAQANGGKNETQMEFDDMVHEDVCGPSTLT
SPTHALPTPLSSHPAYAHASLPPHTAPAPAPAVPNAFLQQQQPPQQQRPLSIPVDLLAVN
AGIAPALTNTGAPATSGVATPSPLPSPTSEMAPSPYGRSTRASSARGSIVSASAAYDGVG
EVYARSTRTSRDPSLSRRSDGSTSSAALQPNGLVGAAAPAAKTKQAGGPTQSVNFVAREA
VLAANYIPALAAPPTSSILPSPSNFSAAPPELLVLGVPAVGAKSRVETQIKISLALVRPR
GGIKREDMDYSAGESIADEMVMPDGGLAAKAGDELERIGSWNHIRLPRYLALKSSRGNKA
GMTGQPKKNAKPLPDPTPETTLDLDVAVVSATEPNREVYICDNCQAREIKRSQRKKDSKG
KTYTAPAPVANDEPQFTPEEERRKVVVFNVTEFVDFTSGEVVLPTRVTCYCRHHKEKKGF
CVTYALRDHLGNVVASGSTPPIMITDDHKTNSNKQSAAATAAAQALAAAAGQDPDAVGVN
RKRRAGKASAASKREKKAPSPPAANGTSNRPRRAATGRSRRGQTDSDDEADAEPAYHAAS
KKARPYDADARPSRKRTSKQHRSPTFAMTPLQSASKPGSPMTSTTQLVPESVQQQQQQLA
QLNGIALPPLSSAPSSSSFGSALGLGGMGDSVMADPSAPPSGIVTPSSAYLPNGRSASMG
PSFSNGYEWRSNVSSPPHSPGSTAPSDTFQSFASAFPSPNASVVEPAPPPAPIHPTPPAP
TSIPSFAIPATEPMPASFTPSWTLQQQPNQLQPLAPAPRIGRLIPGEGPVHGGIEITVLG
ENFVRDLVCVFGDTPAATHYWSNNTLVCVLPPSANPGPVVVGIKGVPLTVEQGTGLQLFT
YKDDSDRSLLELALQVVGLKMTGRLEDASAVAMRIVGNGPGGQGAAPSGSTSPSNGGSAP
TDTASLAATLDAAARSVYPTPATSRASSRRSSFSDSPNASTSSLPSLPAVASGETRNFEG
IVIKFLSLLDLDPSLIPGAAPSLPSTRPPISYANGQQHTLLHLATLLGFHRLVSFLLQRG
IAVDMPDRNGYTALHFAALYGRVTIARLLLEGGASINVRVNDGRTALDIARDRDDIDVEE
LLLARGATTSPSQVTPTMSSAGRQQLVSVSPAHSVRVVPSASSAAFGRRSSLASSFAEDS
TSDEEDDDDEPWSVESDEFPSDWTVSDEEGDSWDEEAEEEVDLRTWSRSRNASTVSLQYL
LEAEAETRVERRTPRSRQVSLPDEDDIPPGQPILAQPRPVKPTSSASWLSQKLKPSVPPS
LNKLQPIAGVTGVWERAKANRFGVPQMHMPELTAFPAMPAALTRHISGGSITKRRRAATV
GEPQLATGDGEETEGELSPSPGRDWRSAFYAPQWWHAKTPSSPPPQYTPSDTLSALPVDE
KSPPSTSTAVSRSPPKAAPVRSRMRRRFSATSSASDETDAETDAGSVMGEVSRTADWMLW
VFWMPVLLFVAWYGWRHWSEYAAPVISTFADTCLPTGIARLLA