Protein Info for mRNA_1586 in Rhodosporidium toruloides IFO0880

Name: 9954
Annotation: BLAST ribosomal protein [Moniliophthora roreri MCA 2997]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 803 transmembrane" amino acids 279 to 301 (23 residues), see Phobius details amino acids 394 to 417 (24 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (803 amino acids)

>mRNA_1586 BLAST ribosomal protein [Moniliophthora roreri MCA 2997] (Rhodosporidium toruloides IFO0880)
MPKRPRCPVCNSKRWHRDGLSGSIVCEEGHLMQGYVQETTETQEGPSQHTQTTRRMRKGR
TKKQKPPSNDHFHGDRATFLVWQCMQLILREQLRVLIDEMGWPVELEAVARDLWTMLVTS
SKVPAAPVDYEKGEEPAGSYSGPRAGYRYTRAGRRPYGRRGAKKSVKKELDEEEEDAEDD
TGDGGGATTTDAEREDEDEDESDADSYFSEGQDADDERPRAGAASRTGSPFSRQPSPHAT
GDSQEQPPASARYPQHKRRSLVPAQPRSDNPRDHPRMEYTLLVIYLACITLRLPVFLADL
FRLAETYQIRYLDAVIHLPANMQAHLHHHNRDVLSPTSVPHLYSHNPSLDQHREETAQIW
LARLVQMYREDWSIEFPEANVPLMLGRLCEVLALPPLAYSLAFTLIGQLPASASFYLADS
IILPASASPAHKSAWPVRLVDKGLAQDWRTALPEIKIATVLVLLCRMLWTLDEEEADSKA
PILSVVASKLPRRDNWIDAIERIATLERPGDQSRLWSQEVAEMLPEDVDAYLGFIETKIV
SEEKVPIRVPEISRFFPPQDVSDSSARPPPTPESCLSQLASIISSLYKAPLCTDADDFPG
PETLSSVLPDKASHETPSALIASIPHTLRRLLTVLASHLTPLPSALPANLRGAAPQDSFD
GVLNLLPFIDQLEQVLLQGGDSAKAAKEEVNEARATAAEEKKRKKIAETQRRKELDQLRK
KIHGRRTKRSKATVDSEDDEIMDEGGQQVKSKEWISDSDEETGGGGGSEEASLGGKVGKG
EVSEEEENDTEGTGSVWAASSEG