Protein Info for mRNA_1588 in Rhodosporidium toruloides IFO0880

Name: 9956
Annotation: HMMPfam-Domain of unknown function (DUF202)-PF02656

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 transmembrane" amino acids 171 to 192 (22 residues), see Phobius details amino acids 265 to 286 (22 residues), see Phobius details amino acids 305 to 325 (21 residues), see Phobius details PF02656: DUF202" amino acids 162 to 286 (125 residues), 62.7 bits, see alignment E=1.9e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (327 amino acids)

>mRNA_1588 HMMPfam-Domain of unknown function (DUF202)-PF02656 (Rhodosporidium toruloides IFO0880)
MAAALSSEGLCETSALLPPSPPVNRPAQEWTAPCPPSTSRSDEQHLLATSPASYGTMETH
ELRRTGSASVLAAHPTRRSSVADSPLADSLDPATSTNGFPEQHIRMRGAGSATDQKNDPL
NTPSAPGPPPQPTAQQKTQGSKNRKRWGGLVWELENKGAVARDHLAGERTFLAWLRTSLA
LASIGIAITQLFRLPSASTTTKSATPTSLPSSAAQLSSALSALATADPSLATSIVPILQA
QQAQIDAAQAMVQDSTKYRKLGKPIGGTFIMLALLFLLLGIHRYFAIQLALMREPSQFPP
SRRSVGLGSFCVGALILATFISILATQ