Protein Info for mRNA_1592 in Rhodosporidium toruloides IFO0880

Name: 9960
Annotation: HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 PF00170: bZIP_1" amino acids 95 to 134 (40 residues), 32.1 bits, see alignment 1e-11 PF07716: bZIP_2" amino acids 96 to 137 (42 residues), 24.7 bits, see alignment 2e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (426 amino acids)

>mRNA_1592 HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 (Rhodosporidium toruloides IFO0880)
MSPASSAASAHLDDPVLPTSTAGSRPKRRLSNAAQAAWMDAGMDDGMLDDDEPKSRASKR
SRAAAQLAGGGLGGSPKQGGGGQGGVPPKALTEKEKEARRVARMIRNRNAAQASRDRKKE
HILWLERRVGELEQLVRQSGIKVSAGHSPFFAGGSVAPSPAQNRLPAIPRNQRETSVASE
SSSSGSGRVADLEEENDSLRSQLHLEQVEKQELLARLEEVEEQPARVSQAPDATLASSFS
PFSSSLVPLPYTEPTFAFDTQNLSPLPQPEELAFVEERDRQRQLASRRTSATPESSSDGT
GKTEGAEQPSDGSSPLVAREDDISLQRKLPKSLSPPPLPLPSPSLPRLFSPTRPRSPRPP
RQRLRGCRSSSSTSRRLRLRPSRTSTSKTPLSRPSGPTGPRASSFPTRRPASLALPMTSR
LSPFST