Protein Info for mRNA_1594 in Rhodosporidium toruloides IFO0880

Name: 9962
Annotation: K16261 YAT yeast amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 28 to 45 (18 residues), see Phobius details amino acids 50 to 68 (19 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 149 to 173 (25 residues), see Phobius details amino acids 194 to 212 (19 residues), see Phobius details amino acids 249 to 268 (20 residues), see Phobius details amino acids 294 to 314 (21 residues), see Phobius details amino acids 320 to 342 (23 residues), see Phobius details amino acids 369 to 387 (19 residues), see Phobius details amino acids 399 to 419 (21 residues), see Phobius details PF00324: AA_permease" amino acids 2 to 423 (422 residues), 342.8 bits, see alignment E=3.1e-106 PF13520: AA_permease_2" amino acids 6 to 384 (379 residues), 85.9 bits, see alignment E=2.7e-28

Best Hits

Swiss-Prot: 44% identical to YCV4_SCHPO: Uncharacterized amino-acid permease C777.04 (SPCC777.04) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K03293, amino acid transporter, AAT family (inferred from 52% identity to ppl:POSPLDRAFT_89933)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (465 amino acids)

>mRNA_1594 K16261 YAT yeast amino acid transporter (Rhodosporidium toruloides IFO0880)
MGFACFGVMMSLGEMATALPSKKGFGGYAARFVDPAMGFAVGWSYLQKYWIVTANNVVAA
AIVVQFWTNAVPVGAWIAIWLVLTVCLNLFGIALFGEIEFWMSFIKIITLTGLILLGLII
DLGGAGVERIGFRYWRDQPFSHYIYKGDLGVFCGVWACMVSALFAYSGTELVGVTFGEAK
RPRKVIPQTIRRTLARILFFYIGSIFVVGLIVKATDPDLIATTKKATSAAASPFVLAIER
ARISVLPDIINAAILLFVLSAANSDLYIGTRTLYGLAAQGQAPRIFMRTNRFGTPYWCTA
LCSAIGCISFMATSSGSRVVFGYFVSLVTVYAALVWMSILFSHIRFMRALKAQGTSRDSL
PWKAPGQPYVAYISLGITAIVTFFKGFDSFTVKFNHKTFITNYLGIPVYLALFLGYKLWY
KTKLIPLKEVDLITGKREFDEDEALWAEEEAESNKPWWKKLWDAA