Protein Info for mRNA_1595 in Rhodosporidium toruloides IFO0880

Name: 9963
Annotation: K13342 PEX5, PXR1 peroxin-5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 694 PF13181: TPR_8" amino acids 534 to 563 (30 residues), 13.8 bits, see alignment (E = 3e-05) amino acids 566 to 596 (31 residues), 19.6 bits, see alignment (E = 3.9e-07) PF13432: TPR_16" amino acids 536 to 595 (60 residues), 29.9 bits, see alignment 3.5e-10 amino acids 571 to 625 (55 residues), 23.1 bits, see alignment 4.7e-08 PF00515: TPR_1" amino acids 566 to 597 (32 residues), 29.3 bits, see alignment (E = 2.7e-10) PF07719: TPR_2" amino acids 566 to 596 (31 residues), 27.3 bits, see alignment (E = 1.3e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (694 amino acids)

>mRNA_1595 K13342 PEX5, PXR1 peroxin-5 (Rhodosporidium toruloides IFO0880)
MSGAFSAMMGGAECSTSSNPLHSLLKQQQTDHSLHHGGFHAGPSSSQGSSMRSYTGTPNQ
AEEADRFFQMQQQQAAAGGAGPLAMDQMRRELENVARGPAGAIKGDREWASQYHPAGSSL
SPAEMARMEEQFRMQQHQGMPSDFAAEFRQQQHFPATSAAPAFAPAAPAAPASSSSAMYS
RPGFAPSYGAYGGSGGMMGMRSFMPSASPSLAQQQSQQDAKGKGRFVELDDADWEAQFAK
IGDATTAEPAAKEAEQQQQPAEAQKESETANLFEGEIPLDATESDQQLLKDLEATWASLK
TQLNSSATSDAELAKWEAQFGSQFNDIHGSPLLDDDDGEFLRTPDIRRAPMWTPENVDSF
LQDQTPFPFNEENEYMQRTDPYADGMRLLAEGAPLSEAALAFEAACRQDESRAEAWKAAG
ETWAADEREVKGIRALEKAVACGGPAGVGAWLSLAVAYVNEGQELRALATLEKWLSLAYP
SISLPPLDTTQIRSPWDASNRVIDLFLAAAQAGPQARAPGQSDELGVVDPDVQVGLGVLF
YSNSEYDKAKDCFEAALSVRPNDFLLWNRLGATLANSGHPEDAIQAYRKALDLRPTFTRA
IYNLGVSCLNIGCYQEAAEHLLAAIQGQMTREEVAASQKGKGKDVDLGRLPEDGSANLFH
TLRRAFLCMERHDLADKAMPGADLNEFRAAGFEF