Protein Info for mRNA_1603 in Rhodosporidium toruloides IFO0880

Name: 9971
Annotation: KOG2948 Predicted metal-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 PF03690: UPF0160" amino acids 15 to 334 (320 residues), 427.4 bits, see alignment E=2.5e-132

Best Hits

Swiss-Prot: 45% identical to YK4P_CAEEL: UPF0160 protein C27H6.8 (C27H6.8) from Caenorhabditis elegans

KEGG orthology group: None (inferred from 52% identity to cne:CND03800)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>mRNA_1603 KOG2948 Predicted metal-binding protein (Rhodosporidium toruloides IFO0880)
MASIAKKARTTPILTSHSGTFHADDALALSMLRVLPQYAQAEVRRSRDPKEWEEATVLFD
VGGEYDAEKGKFDHHQRGFSEVFGHGFVTKLSSAGLIYKHFGQEILSTLLNEPVSSPVVQ
TLYLKMYADFVEAFDGIDNGISQYVTTEPPRYRSRTDISSRVGALNPRWNEPSNEDILLE
RFLKASEMCGNEFKERLDYLAKAWLPAREIVQRAVEARKQVHPSGKILIFDEFAPWKEHL
HNLEEDLKIPTDELPLYALYPENEKPDSKWRVQAVAVSPESFESRKALPEAWRGVRDDAL
SQLTGIDGCVFVHAAGFIGGNNTKDGALAMAVKAREL