Protein Info for mRNA_1613 in Rhodosporidium toruloides IFO0880

Name: 9981
Annotation: K01228 GCS1 mannosyl-oligosaccharide glucosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 808 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF16923: Glyco_hydro_63N" amino acids 39 to 266 (228 residues), 233.3 bits, see alignment E=6.1e-73 PF03200: Glyco_hydro_63" amino acids 307 to 805 (499 residues), 558.1 bits, see alignment E=3e-171 PF01204: Trehalase" amino acids 594 to 784 (191 residues), 20.6 bits, see alignment E=2.7e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (808 amino acids)

>mRNA_1613 K01228 GCS1 mannosyl-oligosaccharide glucosidase (Rhodosporidium toruloides IFO0880)
MRPWQAITAALSLLSSATAASPTADDSPLAPSLAAANSSLLWGSYRPGLYFGLRPRLPDT
LLTGLIWFGAHDWQSYTQPRHECDQRDGLTYSYTEHDGRSAAKQIIKDPRNNVQLTIRFV
KVTGAQAGQGGSWAVRIEGEPLDQSKLSRISLINYFGNDAPLSYLELENEEDSNGLEGIV
RLKGQTPGLGKYKIRVENHDSNVDVEAGPHGADFGDKLQRTQFLGMGVPHGLVWQAKNAL
MNTMLTHSKTVLERYGQENPPDPALLFSFPNEVRTNAGLYGLQRTYVGRWGVDVFFDTED
APANLNHASLTAALDASSAAFDARFNTLFPQISTFSSSHQAFARALTANLIGGIGYFHGP
SIVDHTFSQEWDAEDIDGGAPVKKPELTESRELFSATPSRSFFPRGFYWDEGFHLALIGA
WDNDLSLEIFKSWLNLADADGWIAREQILGEEARSRVPEDFQAQYPSYGNPPTLIMGLTG
YIARLRERGVSLGTSLDEINEDAPAIASPAVLASLHLTSPSLASSYLTSVYPTLKRHYEW
FRRTQKGEVRQFGRKARSANEAYRWRGRTADHVLTSGLDDYPRAVPPHLGELHIDLASWM
GFFARTMRDVAEFLGEEEDAEEFDEQYDAIVGNIEDLHWSEEEQMYCDASIDEDDDSYHV
CHRGYISLFPFLLSLLPSSSPHLGPVLELMRDPNHLWSPYGIRSLSKNHPLFGQGENYWR
GPIWIQMNYLALAALKNKYAKEPGPFQTRAAEIYDELRNNVIENVHKEWVRTGTVWEQYN
AVTGQGQRSDPFTGWTSLVTLIMAEQYH