Protein Info for mRNA_1616 in Rhodosporidium toruloides IFO0880

Name: 9984
Annotation: K03232 EEF1B elongation factor 1-beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 PF10587: EF-1_beta_acid" amino acids 102 to 129 (28 residues), 54.4 bits, see alignment (E = 1.4e-18) PF00736: EF1_GNE" amino acids 141 to 214 (74 residues), 95.7 bits, see alignment E=1.5e-31

Best Hits

Swiss-Prot: 60% identical to EF1B_PENCI: Elongation factor 1-beta from Penicillium citrinum

KEGG orthology group: K03232, elongation factor 1-beta (inferred from 66% identity to cci:CC1G_09403)

Predicted SEED Role

"Translation elongation factor 1 beta subunit" in subsystem Translation elongation factors eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (220 amino acids)

>mRNA_1616 K03232 EEF1B elongation factor 1-beta (Rhodosporidium toruloides IFO0880)
MGFPEFTNPAGLQSLEAHLADKSYIEGYTPSQADVAVYKALASAPDAATYPRSARWFKHI
QSYEAEHETLPGDASKPASAYGSAVAAAAAPAAAEDEDDIDLFGSDDEEVDPEAEALKQK
RLAEYAAKKANKPKTIAKSLVTLDVKPWDDETDMAQLEANVRAIEKPGLVWGLSKLVPIG
YGIKKLQMSLVVEDELVSLDELQDQIAEDEEHVQVGTSST