Protein Info for mRNA_1627 in Rhodosporidium toruloides IFO0880

Name: 9995
Annotation: K18551 SDT1 pyrimidine and pyridine-specific 5'-nucleotidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 TIGR01993: pyrimidine 5'-nucleotidase" amino acids 33 to 218 (186 residues), 167.4 bits, see alignment E=3e-53 PF13419: HAD_2" amino acids 33 to 213 (181 residues), 33.4 bits, see alignment E=4.9e-12 TIGR01509: HAD hydrolase, family IA, variant 3" amino acids 33 to 217 (185 residues), 32.9 bits, see alignment E=6.7e-12 PF00702: Hydrolase" amino acids 33 to 212 (180 residues), 27.6 bits, see alignment E=3.6e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (278 amino acids)

>mRNA_1627 K18551 SDT1 pyrimidine and pyridine-specific 5'-nucleotidase (Rhodosporidium toruloides IFO0880)
MTVPRTHKRSTLVTNNDGTPRGTPPPLDDKLIVLFDIDNTLYSKEAGIAELMKDKIRAYF
RKLGLTEEEAAHLHHEYYKTYGLAIRGLVRHHKVDPLDYDKHCDQALPLETVLKVDPRLQ
QLLRDIDREKCHVWALTNAYVNHAVRVLKLLGISEFFEGIVSCDYGAGDFSCKPEAEFFQ
ESVEAVSSPPPPLSRLYFVDDSALNIRGANALGWGHCVLFDEAGAEENRLGGLDKMPLDE
DKEGPAKEAARVSVISDLEELRHVWREVFKAPPTNGSS