Experiment setAAux_Arg for Rhodosporidium toruloides IFO0880

Compare to:

YNB Glucose 75mM Arginine

200 most detrimental genes:

  gene name fitness t score description  
mRNA_4237 12605 +2.4 2.5 K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1 compare
mRNA_2822 11190 +2.3 0.8 SUPERFAMILY--SSF52047 compare
mRNA_3305 11673 +2.2 1.4 KOG3299 Uncharacterized conserved protein compare
mRNA_6738 15106 +2.2 2.3 Hypothetical Protein compare
mRNA_327 8695 +2.1 2.5 KOG0378 40S ribosomal protein S4 compare
mRNA_3203 11571 +2.0 1.6 Hypothetical Protein compare
mRNA_4670 13038 +2.0 1.6 Hypothetical Protein compare
mRNA_4878 13246 +1.9 12.9 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_699 9067 +1.9 5.6 K20289 COG2 conserved oligomeric Golgi complex subunit 2 compare
mRNA_3988 12356 +1.9 1.2 Hypothetical Protein compare
mRNA_5369 13737 +1.9 1.3 K03627 MBF1 putative transcription factor compare
mRNA_7419 15787 +1.9 1.0 Hypothetical Protein compare
mRNA_6775 15143 +1.9 1.0 K14784 CMS1 protein CMS1 compare
mRNA_6268 14636 +1.8 1.4 HMMPfam-Survival motor neuron protein (SMN)-PF06003 compare
mRNA_3307 11675 +1.8 10.3 K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit compare
mRNA_182 8550 +1.8 0.9 K19828 MTG1 mitochondrial GTPase 1 compare
mRNA_8246 16614 +1.7 1.6 Hypothetical Protein compare
mRNA_109 8477 +1.7 1.3 Hypothetical Protein compare
mRNA_7417 15785 +1.7 2.0 K03353 APC6, CDC16 anaphase-promoting complex subunit 6 compare
mRNA_3516 11884 +1.7 1.1 K01466 allB allantoinase compare
mRNA_2185 10553 +1.7 3.0 HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879 compare
mRNA_2748 11116 +1.7 1.2 KOG3772 M-phase inducer phosphatase compare
mRNA_6799 15167 +1.6 0.6 K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase compare
mRNA_4213 12581 +1.6 0.9 K01673 cynT, can carbonic anhydrase compare
mRNA_275 8643 +1.6 1.3 BLAST nitrogen assimilation transcription factor [Rhodo... compare
mRNA_1755 10123 +1.6 8.5 K00326 E1.6.2.2 cytochrome-b5 reductase compare
mRNA_1538 9906 +1.6 1.6 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_5386 13754 +1.6 1.0 Hypothetical Protein compare
mRNA_5144 13512 +1.6 3.1 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_1480 9848 +1.6 0.8 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_4777 13145 +1.5 0.3 Hypothetical Protein compare
mRNA_967 9335 +1.5 2.0 HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452 compare
mRNA_5624 13992 +1.5 1.4 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_118 8486 +1.5 1.4 HMMPfam-Protein of unknown function (DUF1674)-PF07896 compare
mRNA_443 8811 +1.5 3.3 KOG2742 Predicted oxidoreductase compare
mRNA_1969 10337 +1.4 1.6 K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1 compare
mRNA_6141 14509 +1.4 2.1 HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670 compare
mRNA_7666 16034 +1.4 1.1 K20184 VPS41 vacuolar protein sorting-associated protein 41 compare
mRNA_374 8742 +1.4 0.9 Hypothetical Protein compare
mRNA_7792 16160 +1.4 0.3 Hypothetical Protein compare
mRNA_7441 15809 +1.4 1.4 K08884 K08884 serine/threonine protein kinase, bacterial compare
mRNA_2905 11273 +1.4 4.0 Hypothetical Protein compare
mRNA_7823 16191 +1.3 1.0 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_6239 14607 +1.3 3.5 K01372 BLMH, pepC bleomycin hydrolase compare
mRNA_1560 9928 +1.3 2.3 HMMPfam-Bromodomain-PF00439,ProSiteProfiles-Bromodomain profile.-PS50014,SMART-bromo domain-SM00297,SUPERFAMILY--SSF47370 compare
mRNA_3121 11489 +1.3 0.7 KOG1039 Predicted E3 ubiquitin ligase compare
mRNA_7078 15446 +1.3 1.5 Hypothetical Protein compare
mRNA_7900 16268 +1.3 3.2 Hypothetical Protein compare
mRNA_5808 14176 +1.3 1.6 HMMPfam-Cytochrome oxidase complex assembly protein 1-PF08695 compare
mRNA_273 8641 +1.3 2.9 K15174 PAF1 RNA polymerase II-associated factor 1 compare
mRNA_5548 13916 +1.3 2.3 KOG4006 Anti-proliferation factor BTG1/TOB compare
mRNA_2319 10687 +1.3 3.6 KOG3872 FOG FHA domain compare
mRNA_486 8854 +1.3 2.2 HMMPfam-Domain of unknown function (DUF202)-PF02656 compare
mRNA_177 8545 +1.3 1.2 KOG4096 Uncharacterized conserved protein compare
mRNA_1285 9653 +1.3 2.1 Interpro Ribosomal protein 60S L18 and 50S L18e 0 compare
mRNA_6224 14592 +1.3 2.1 Hypothetical Protein compare
mRNA_4891 13259 +1.2 2.2 KOG3140 Predicted membrane protein compare
mRNA_2386 10754 +1.2 3.8 K01530 E3.6.3.1 phospholipid-translocating ATPase compare
mRNA_2097 10465 +1.2 0.3 K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase compare
mRNA_5863 14231 +1.2 1.5 K09281 K09281 copper-fist transcription factor compare
mRNA_8199 16567 +1.2 0.8 Hypothetical Protein compare
mRNA_2009 10377 +1.2 3.2 BLAST ankyrin [Cenococcum geophilum 1.58] compare
mRNA_4509 12877 +1.2 2.3 HMMPfam-Ctr copper transporter family-PF04145 compare
mRNA_4961 13329 +1.2 0.8 Hypothetical Protein compare
mRNA_7169 15537 +1.2 0.9 K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein compare
mRNA_7336 15704 +1.1 2.3 Hypothetical Protein compare
mRNA_4065 12433 +1.1 1.5 KOG1198 Zinc-binding oxidoreductase compare
mRNA_1741 10109 +1.1 3.8 HMMPfam-Calcipressin-PF04847 compare
mRNA_3879 12247 +1.1 2.3 Interpro Selenoprotein SelK_SelG compare
mRNA_5734 14102 +1.1 0.6 K01183 E3.2.1.14 chitinase compare
mRNA_2270 10638 +1.1 5.1 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_5805 14173 +1.1 1.6 HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324 compare
mRNA_427 8795 +1.1 1.6 Hypothetical Protein compare
mRNA_4912 13280 +1.1 2.3 KOG3309 Ferredoxin compare
mRNA_3917 12285 +1.1 1.7 KOG4479 Transcription factor e(y)2 compare
mRNA_192 8560 +1.1 3.2 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_6582 14950 +1.1 2.7 K11517 HAO (S)-2-hydroxy-acid oxidase compare
mRNA_3302 11670 +1.1 3.8 K07232 chaC cation transport protein ChaC compare
mRNA_7869 16237 +1.1 1.6 KOG4366 Predicted thioesterase compare
mRNA_2189 10557 +1.1 3.4 K11236 CDC24 cell division control protein 24 compare
mRNA_5603 13971 +1.1 3.9 K09523 DNAJC3 DnaJ homolog subfamily C member 3 compare
mRNA_2798 11166 +1.1 1.6 K03537 POP5 ribonuclease P/MRP protein subunit POP5 compare
mRNA_2891 11259 +1.1 2.2 Hypothetical Protein compare
mRNA_263 8631 +1.1 6.1 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_2364 10732 +1.1 1.7 K20471 COPD, ARCN1, RET2 coatomer subunit delta compare
mRNA_3834 12202 +1.1 1.8 Hypothetical Protein compare
mRNA_4395 12763 +1.1 1.6 HMMPfam-RTA1 like protein-PF04479 compare
mRNA_4968 13336 +1.1 4.8 KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) compare
mRNA_6876 15244 +1.0 2.9 Hypothetical Protein compare
mRNA_6839 15207 +1.0 6.2 K17257 ITFG1 integrin alpha FG-GAP repeat containing protein 1 compare
mRNA_1511 9879 +1.0 2.2 KOG2136 Transcriptional regulators binding to the GC-rich sequences compare
mRNA_2595 10963 +1.0 1.7 K14012 SHP1, UBX1, NSFL1C UBX domain-containing protein 1 compare
mRNA_6154 14522 +1.0 12.5 K16667 PTPRG receptor-type tyrosine-protein phosphatase gamma compare
mRNA_4005 12373 +1.0 1.1 HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 compare
mRNA_2876 11244 +1.0 2.2 K18715 NUP159 nucleoporin NUP159 compare
mRNA_5616 13984 +1.0 0.7 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_6304 14672 +1.0 3.5 Hypothetical Protein compare
mRNA_7374 15742 +1.0 0.8 Hypothetical Protein compare
mRNA_1178 9546 +1.0 2.5 Hypothetical Protein compare
mRNA_1569 9937 +1.0 1.1 KOG3114 Uncharacterized conserved protein compare
mRNA_3580 11948 +1.0 0.1 KOG0715 Molecular chaperone (DnaJ superfamily) compare
mRNA_6771 15139 +1.0 1.1 Hypothetical Protein compare
mRNA_4569 12937 +1.0 1.4 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 compare
mRNA_1677 10045 +1.0 7.0 K15620 GOLPH3, GPP34 golgi phosphoprotein 3 compare
mRNA_5918 14286 +1.0 0.5 K11498 CENPE centromeric protein E compare
mRNA_5091 13459 +1.0 3.4 Hypothetical Protein compare
mRNA_921 9289 +1.0 2.5 KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) compare
mRNA_6195 14563 +1.0 2.1 SUPERFAMILY--SSF52047 compare
mRNA_4190 12558 +1.0 2.1 Hypothetical Protein compare
mRNA_4632 13000 +1.0 1.6 K13107 RBMX2, IST3 RNA-binding motif protein, X-linked 2 compare
mRNA_523 8891 +1.0 1.5 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_6536 14904 +0.9 3.9 HMMPfam-Protein of unknown function (DUF837)-PF05769 compare
mRNA_7551 15919 +0.9 4.8 KOG1032 Uncharacterized conserved protein, contains GRAM domain compare
mRNA_3987 12355 +0.9 2.9 K08576 CAPN7 calpain-7 compare
mRNA_1282 9650 +0.9 0.8 Hypothetical Protein compare
mRNA_2081 10449 +0.9 6.0 BLAST 163.m06341p [Cryptococcus neoformans] compare
mRNA_1806 10174 +0.9 1.2 BLAST related to C2H2 zinc finger protein [Ustilago hordei] compare
mRNA_7510 15878 +0.9 4.6 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_8419 16787 +0.9 1.2 K14310 NUP205, NUP192 nuclear pore complex protein Nup205 compare
mRNA_6310 14678 +0.9 0.4 Hypothetical Protein compare
mRNA_2784 11152 +0.9 5.8 K20241 WDR44, RAB11BP WD repeat-containing protein 44 compare
mRNA_1929 10297 +0.9 3.8 K07880 RAB4B Ras-related protein Rab-4B compare
mRNA_70 8438 +0.9 2.2 HMMPfam-Membrane-associating domain-PF01284 compare
mRNA_7044 15412 +0.9 3.7 KOG4299 PHD Zn-finger protein compare
mRNA_7019 15387 +0.9 3.2 K13212 LUC7L2 RNA-binding protein Luc7-like 2 compare
mRNA_5898 14266 +0.9 0.9 Hypothetical Protein compare
mRNA_7378 15746 +0.9 1.3 KOG1180 Acyl-CoA synthetase compare
mRNA_318 8686 +0.9 1.4 Interpro Fungal domain of unknown function (DUF1750) compare
mRNA_1934 10302 +0.9 5.2 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_5460 13828 +0.9 2.3 Hypothetical Protein compare
mRNA_4673 13041 +0.9 1.8 K01069 E3.1.2.6, gloB hydroxyacylglutathione hydrolase compare
mRNA_8121 16489 +0.9 1.0 Hypothetical Protein compare
mRNA_3012 11380 +0.9 3.2 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit compare
mRNA_3890 12258 +0.9 3.6 HMMPfam-Pal1 cell morphology protein-PF08316 compare
mRNA_3116 11484 +0.9 4.5 BLAST Pogo transposable element [Larimichthys crocea] compare
mRNA_2647 11015 +0.9 1.4 Hypothetical Protein compare
mRNA_1982 10350 +0.9 2.8 HMMPfam-Copper binding proteins, plastocyanin/azurin family-PF00127,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF49503 compare
mRNA_6777 15145 +0.9 1.3 Hypothetical Protein compare
mRNA_1211 9579 +0.9 1.4 K15078 SLX1 structure-specific endonuclease subunit SLX1 compare
mRNA_7448 15816 +0.9 0.5 BLAST putative protein of unknown function [Pseudozyma ... compare
mRNA_8363 16731 +0.9 3.5 KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins compare
mRNA_5180 13548 +0.9 3.6 Hypothetical Protein compare
mRNA_5846 14214 +0.9 1.5 K04508 TBL1 transducin (beta)-like 1 compare
mRNA_1213 9581 +0.9 0.3 KOG1205 Predicted dehydrogenase compare
mRNA_6489 14857 +0.9 6.1 KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases compare
mRNA_1031 9399 +0.9 1.1 Hypothetical Protein compare
mRNA_8402 16770 +0.9 2.9 K07579 K07579 putative methylase compare
mRNA_7449 15817 +0.9 1.5 BLAST GH19984 [Drosophila grimshawi] compare
mRNA_6819 15187 +0.8 3.5 SUPERFAMILY--SSF103107 compare
mRNA_4917 13285 +0.8 0.8 KOG2920 Predicted methyltransferase compare
mRNA_5155 13523 +0.8 2.2 BLAST unknown [Tremella fuciformis] compare
mRNA_3445 11813 +0.8 2.7 HMMPfam-BRO1-like domain-PF03097,ProSiteProfiles-BRO1 domain profile.-PS51180,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SMART-BRO1-like domain-SM01041 compare
mRNA_2368 10736 +0.8 1.9 Hypothetical Protein compare
mRNA_6401 14769 +0.8 0.8 HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112 compare
mRNA_7392 15760 +0.8 1.0 Hypothetical Protein compare
mRNA_4854 13222 +0.8 3.2 ProSiteProfiles-BTB domain profile.-PS50097 compare
mRNA_1674 10042 +0.8 4.0 K07297 ADIPOR adiponectin receptor compare
mRNA_8457 16825 +0.8 2.4 K02728 PSMA4 20S proteasome subunit alpha 3 compare
mRNA_7428 15796 +0.8 1.3 Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component compare
mRNA_4919 13287 +0.8 6.2 K01768 E4.6.1.1 adenylate cyclase compare
mRNA_6281 14649 +0.8 1.0 HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909 compare
mRNA_3107 11475 +0.8 2.7 K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2 compare
mRNA_4637 13005 +0.8 3.1 Hypothetical Protein compare
mRNA_4605 12973 +0.8 1.5 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_3392 11760 +0.8 2.0 HMMPfam-Caffeine-induced death protein 2-PF09774 compare
mRNA_1260 9628 +0.8 7.8 Hypothetical Protein compare
mRNA_1214 9582 +0.8 1.0 Hypothetical Protein compare
mRNA_7103 15471 +0.8 1.4 Hypothetical Protein compare
mRNA_8245 16613 +0.8 1.5 HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506 compare
mRNA_7200 15568 +0.8 2.2 K14816 REI1 pre-60S factor REI1 compare
mRNA_1912 10280 +0.8 5.8 K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2 compare
mRNA_1832 10200 +0.8 3.8 K11188 PRDX6 peroxiredoxin 6, 1-Cys peroxiredoxin compare
mRNA_6823 15191 +0.8 0.9 BLAST TNFR/NGFR cysteine-rich region family protein [Rh... compare
mRNA_715 9083 +0.8 3.2 KOG2893 Zn finger protein compare
mRNA_2437 10805 +0.8 4.8 Hypothetical Protein compare
mRNA_397 8765 +0.8 3.2 SUPERFAMILY--SSF52047 compare
mRNA_4723 13091 +0.8 0.6 Hypothetical Protein compare
mRNA_1487 9855 +0.8 1.1 K01883 CARS, cysS cysteinyl-tRNA synthetase compare
mRNA_8476 16844 +0.8 1.9 BLAST glycoside hydrolase family 43 protein [Mycena chlorop... compare
mRNA_2235 10603 +0.8 2.1 K11843 USP14, UBP6 ubiquitin carboxyl-terminal hydrolase 14 compare
mRNA_3617 11985 +0.8 1.8 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_1615 9983 +0.8 0.3 K03283 HSPA1_8 heat shock 70kDa protein 1/8 compare
mRNA_4812 13180 +0.8 1.9 K15255 PIF1 ATP-dependent DNA helicase PIF1 compare
mRNA_3015 11383 +0.8 0.8 KOG3252 Uncharacterized conserved protein compare
mRNA_1708 10076 +0.8 2.6 HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_4137 12505 +0.8 5.9 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_5720 14088 +0.8 2.3 K04392 RAC1 Ras-related C3 botulinum toxin substrate 1 compare
mRNA_7424 15792 +0.8 0.2 Hypothetical Protein compare
mRNA_6411 14779 +0.8 0.2 BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M... compare
mRNA_6285 14653 +0.8 1.6 K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5 compare
mRNA_6975 15343 +0.8 4.9 Hypothetical Protein compare
mRNA_748 9116 +0.8 4.5 Hypothetical Protein compare
mRNA_1891 10259 +0.8 1.7 K03083 GSK3B glycogen synthase kinase 3 beta compare
mRNA_4503 12871 +0.8 1.2 K12397 AP3B AP-3 complex subunit beta compare
mRNA_2405 10773 +0.7 8.5 KOG1910 Uncharacterized conserved protein compare
mRNA_113 8481 +0.7 1.4 KOG0209 P-type ATPase compare
mRNA_5102 13470 +0.7 6.3 KOG0619 FOG Leucine rich repeat compare
mRNA_3597 11965 +0.7 0.7 K15562 BUR1, SGV1 serine/threonine-protein kinase BUR1 compare
mRNA_4244 12612 +0.7 2.0 Hypothetical Protein compare
mRNA_2688 11056 +0.7 0.7 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in auxotrophy experiments

For auxotrophy unknown across organisms