Experiment setAAux_YNB_Gluc for Rhodosporidium toruloides IFO0880

Compare to:

YNB Glucose

200 most detrimental genes:

  gene name fitness t score description  
mRNA_3988 12356 +2.4 1.3 Hypothetical Protein compare
mRNA_6268 14636 +2.4 2.1 HMMPfam-Survival motor neuron protein (SMN)-PF06003 compare
mRNA_327 8695 +2.3 2.1 KOG0378 40S ribosomal protein S4 compare
mRNA_3203 11571 +2.2 1.6 Hypothetical Protein compare
mRNA_699 9067 +2.1 6.5 K20289 COG2 conserved oligomeric Golgi complex subunit 2 compare
mRNA_4878 13246 +2.1 13.6 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_374 8742 +2.0 1.7 Hypothetical Protein compare
mRNA_4670 13038 +2.0 1.5 Hypothetical Protein compare
mRNA_6799 15167 +1.9 0.9 K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase compare
mRNA_3307 11675 +1.9 11.2 K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit compare
mRNA_5624 13992 +1.8 1.8 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_2185 10553 +1.8 2.6 HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879 compare
mRNA_1755 10123 +1.8 8.7 K00326 E1.6.2.2 cytochrome-b5 reductase compare
mRNA_7424 15792 +1.8 1.5 Hypothetical Protein compare
mRNA_7823 16191 +1.7 1.0 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_8246 16614 +1.7 1.2 Hypothetical Protein compare
mRNA_6771 15139 +1.7 1.5 Hypothetical Protein compare
mRNA_4777 13145 +1.7 0.5 Hypothetical Protein compare
mRNA_2748 11116 +1.6 1.0 KOG3772 M-phase inducer phosphatase compare
mRNA_1969 10337 +1.6 1.5 K14961 RBBP5, SWD1, CPS50 COMPASS component SWD1 compare
mRNA_4299 12667 +1.6 1.0 K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1 compare
mRNA_7336 15704 +1.6 3.5 Hypothetical Protein compare
mRNA_1538 9906 +1.6 1.6 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_1560 9928 +1.5 2.8 HMMPfam-Bromodomain-PF00439,ProSiteProfiles-Bromodomain profile.-PS50014,SMART-bromo domain-SM00297,SUPERFAMILY--SSF47370 compare
mRNA_5144 13512 +1.5 3.1 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_7419 15787 +1.5 0.7 Hypothetical Protein compare
mRNA_4213 12581 +1.5 0.5 K01673 cynT, can carbonic anhydrase compare
mRNA_2270 10638 +1.5 5.8 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_7315 15683 +1.5 1.7 K05527 bolA BolA protein compare
mRNA_7229 15597 +1.5 2.0 Hypothetical Protein compare
mRNA_5805 14173 +1.5 3.2 HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324 compare
mRNA_3516 11884 +1.5 1.2 K01466 allB allantoinase compare
mRNA_1480 9848 +1.4 0.5 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_2386 10754 +1.4 5.1 K01530 E3.6.3.1 phospholipid-translocating ATPase compare
mRNA_177 8545 +1.4 0.7 KOG4096 Uncharacterized conserved protein compare
mRNA_182 8550 +1.4 0.5 K19828 MTG1 mitochondrial GTPase 1 compare
mRNA_2319 10687 +1.4 4.1 KOG3872 FOG FHA domain compare
mRNA_7417 15785 +1.4 1.7 K03353 APC6, CDC16 anaphase-promoting complex subunit 6 compare
mRNA_7572 15940 +1.4 1.3 Hypothetical Protein compare
mRNA_273 8641 +1.4 3.4 K15174 PAF1 RNA polymerase II-associated factor 1 compare
mRNA_5734 14102 +1.4 0.6 K01183 E3.2.1.14 chitinase compare
mRNA_2822 11190 +1.4 0.5 SUPERFAMILY--SSF52047 compare
mRNA_562 8930 +1.3 0.4 HMMPfam-HPC2 and ubinuclein domain-PF08729 compare
mRNA_109 8477 +1.3 0.8 Hypothetical Protein compare
mRNA_3580 11948 +1.3 0.3 KOG0715 Molecular chaperone (DnaJ superfamily) compare
mRNA_4395 12763 +1.3 1.8 HMMPfam-RTA1 like protein-PF04479 compare
mRNA_65 8433 +1.3 2.1 K12882 NCBP1, CBP80 nuclear cap-binding protein subunit 1 compare
mRNA_7900 16268 +1.3 3.1 Hypothetical Protein compare
mRNA_2905 11273 +1.3 4.0 Hypothetical Protein compare
mRNA_5363 13731 +1.3 0.8 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_6975 15343 +1.3 9.0 Hypothetical Protein compare
mRNA_4891 13259 +1.3 3.1 KOG3140 Predicted membrane protein compare
mRNA_2647 11015 +1.3 2.0 Hypothetical Protein compare
mRNA_6839 15207 +1.3 7.0 K17257 ITFG1 integrin alpha FG-GAP repeat containing protein 1 compare
mRNA_4968 13336 +1.3 6.0 KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) compare
mRNA_1188 9556 +1.3 1.0 Hypothetical Protein compare
mRNA_5898 14266 +1.3 1.6 Hypothetical Protein compare
mRNA_1282 9650 +1.3 0.9 Hypothetical Protein compare
mRNA_2189 10557 +1.2 3.9 K11236 CDC24 cell division control protein 24 compare
mRNA_8363 16731 +1.2 3.7 KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins compare
mRNA_1677 10045 +1.2 10.1 K15620 GOLPH3, GPP34 golgi phosphoprotein 3 compare
mRNA_7044 15412 +1.2 5.5 KOG4299 PHD Zn-finger protein compare
mRNA_6917 15285 +1.2 3.1 K04883 KCNAB2 potassium voltage-gated channel Shaker-related subfamily A, beta member 2 compare
mRNA_8325 16693 +1.2 1.2 KOG1688 Golgi proteins involved in ER retention (RER) compare
mRNA_1982 10350 +1.2 4.3 HMMPfam-Copper binding proteins, plastocyanin/azurin family-PF00127,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF49503 compare
mRNA_8242 16610 +1.2 1.4 KOG3319 Predicted membrane protein compare
mRNA_8159 16527 +1.2 3.8 K17607 TIPRL, TIP41 type 2A phosphatase activator TIP41 compare
mRNA_5548 13916 +1.2 2.3 KOG4006 Anti-proliferation factor BTG1/TOB compare
mRNA_7448 15816 +1.2 0.6 BLAST putative protein of unknown function [Pseudozyma ... compare
mRNA_118 8486 +1.2 0.8 HMMPfam-Protein of unknown function (DUF1674)-PF07896 compare
mRNA_5720 14088 +1.2 4.6 K04392 RAC1 Ras-related C3 botulinum toxin substrate 1 compare
mRNA_523 8891 +1.2 2.5 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_2891 11259 +1.2 2.3 Hypothetical Protein compare
mRNA_2131 10499 +1.2 3.1 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_7146 15514 +1.2 3.4 Hypothetical Protein compare
mRNA_5369 13737 +1.2 0.5 K03627 MBF1 putative transcription factor compare
mRNA_5603 13971 +1.2 4.1 K09523 DNAJC3 DnaJ homolog subfamily C member 3 compare
mRNA_5335 13703 +1.1 1.7 HMMPfam-Domain of unknown function (DUF4202)-PF13875 compare
mRNA_3834 12202 +1.1 1.9 Hypothetical Protein compare
mRNA_1741 10109 +1.1 3.3 HMMPfam-Calcipressin-PF04847 compare
mRNA_263 8631 +1.1 6.0 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_5807 14175 +1.1 2.2 HMMPfam-Protein of unknown function (DUF2638)-PF10937 compare
mRNA_2375 10743 +1.1 3.5 Hypothetical Protein compare
mRNA_7510 15878 +1.1 4.9 K11644 SIN3A paired amphipathic helix protein Sin3a compare
mRNA_7078 15446 +1.1 1.3 Hypothetical Protein compare
mRNA_4065 12433 +1.1 1.2 KOG1198 Zinc-binding oxidoreductase compare
mRNA_4237 12605 +1.1 0.5 K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1 compare
mRNA_8199 16567 +1.1 0.4 Hypothetical Protein compare
mRNA_7551 15919 +1.1 5.4 KOG1032 Uncharacterized conserved protein, contains GRAM domain compare
mRNA_6239 14607 +1.1 2.3 K01372 BLMH, pepC bleomycin hydrolase compare
mRNA_6154 14522 +1.1 12.6 K16667 PTPRG receptor-type tyrosine-protein phosphatase gamma compare
mRNA_967 9335 +1.1 1.1 HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452 compare
mRNA_8332 16700 +1.1 5.6 K10082 LMAN2, VIP36 lectin, mannose-binding 2 compare
mRNA_6876 15244 +1.1 2.4 Hypothetical Protein compare
mRNA_443 8811 +1.1 1.5 KOG2742 Predicted oxidoreductase compare
mRNA_7666 16034 +1.1 0.8 K20184 VPS41 vacuolar protein sorting-associated protein 41 compare
mRNA_5386 13754 +1.1 0.5 Hypothetical Protein compare
mRNA_7374 15742 +1.1 0.8 Hypothetical Protein compare
mRNA_1912 10280 +1.1 6.8 K04450 ATF2, CREBP1 cyclic AMP-dependent transcription factor ATF-2 compare
mRNA_6224 14592 +1.1 1.8 Hypothetical Protein compare
mRNA_7741 16109 +1.1 2.8 Hypothetical Protein compare
mRNA_3657 12025 +1.0 1.3 Hypothetical Protein compare
mRNA_5167 13535 +1.0 3.0 Hypothetical Protein compare
mRNA_753 9121 +1.0 3.3 K02737 PSMB5 20S proteasome subunit beta 5 compare
mRNA_6221 14589 +1.0 3.7 HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SMART-Broad-Complex, Tramtrack and Bric a brac-SM00225,SUPERFAMILY--SSF54695 compare
mRNA_4547 12915 +1.0 2.2 ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199 compare
mRNA_6195 14563 +1.0 2.2 SUPERFAMILY--SSF52047 compare
mRNA_2364 10732 +1.0 1.6 K20471 COPD, ARCN1, RET2 coatomer subunit delta compare
mRNA_4662 13030 +1.0 2.4 K20352 TMED10, ERV25 p24 family protein delta-1 compare
mRNA_6141 14509 +1.0 1.3 HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670 compare
mRNA_2097 10465 +1.0 0.2 K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase compare
mRNA_3383 11751 +1.0 0.5 HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383 compare
mRNA_7869 16237 +1.0 1.9 KOG4366 Predicted thioesterase compare
mRNA_1710 10078 +1.0 2.4 Hypothetical Protein compare
mRNA_636 9004 +1.0 3.5 Hypothetical Protein compare
mRNA_7571 15939 +1.0 0.4 K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A compare
mRNA_3890 12258 +1.0 4.1 HMMPfam-Pal1 cell morphology protein-PF08316 compare
mRNA_8440 16808 +1.0 0.9 Hypothetical Protein compare
mRNA_507 8875 +1.0 0.7 K19347 SUN1_2 SUN domain-containing protein 1/2 compare
mRNA_8282 16650 +1.0 1.3 K11359 SPT7 transcriptional activator SPT7 compare
mRNA_5808 14176 +1.0 1.0 HMMPfam-Cytochrome oxidase complex assembly protein 1-PF08695 compare
mRNA_6562 14930 +1.0 2.7 K20353 SEC16 COPII coat assembly protein SEC16 compare
mRNA_7169 15537 +1.0 0.3 K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein compare
mRNA_5091 13459 +1.0 3.2 Hypothetical Protein compare
mRNA_1083 9451 +1.0 -0.0 Hypothetical Protein compare
mRNA_7515 15883 +1.0 9.6 K07827 KRAS, KRAS2 GTPase KRas compare
mRNA_2368 10736 +1.0 2.3 Hypothetical Protein compare
mRNA_4854 13222 +0.9 3.2 ProSiteProfiles-BTB domain profile.-PS50097 compare
mRNA_2784 11152 +0.9 5.8 K20241 WDR44, RAB11BP WD repeat-containing protein 44 compare
mRNA_6536 14904 +0.9 4.1 HMMPfam-Protein of unknown function (DUF837)-PF05769 compare
mRNA_2009 10377 +0.9 2.6 BLAST ankyrin [Cenococcum geophilum 1.58] compare
mRNA_4605 12973 +0.9 1.8 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_6775 15143 +0.9 0.3 K14784 CMS1 protein CMS1 compare
mRNA_1211 9579 +0.9 1.3 K15078 SLX1 structure-specific endonuclease subunit SLX1 compare
mRNA_1686 10054 +0.9 1.5 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_5454 13822 +0.9 1.0 KOG2673 Uncharacterized conserved protein, contains PSP domain compare
mRNA_5616 13984 +0.9 0.4 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_4205 12573 +0.9 3.8 K09276 YBX1, NSEP1 Y-box-binding protein 1 compare
mRNA_8371 16739 +0.9 0.4 HMMPfam-GPR1/FUN34/yaaH family-PF01184 compare
mRNA_6819 15187 +0.9 3.1 SUPERFAMILY--SSF103107 compare
mRNA_3107 11475 +0.9 3.1 K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2 compare
mRNA_3753 12121 +0.9 5.9 K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase compare
mRNA_2081 10449 +0.9 6.0 BLAST 163.m06341p [Cryptococcus neoformans] compare
mRNA_6489 14857 +0.9 5.9 KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases compare
mRNA_2527 10895 +0.9 2.2 BLAST protein DGCR14-like [Mucor ambiguus] compare
mRNA_5550 13918 +0.9 1.0 K09424 REB1 Myb-like DNA-binding protein REB1 compare
mRNA_5503 13871 +0.9 2.6 HMMPfam-Chitin synthase III catalytic subunit-PF12271 compare
mRNA_1260 9628 +0.9 8.1 Hypothetical Protein compare
mRNA_2995 11363 +0.9 6.2 K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3 compare
mRNA_8205 16573 +0.9 1.5 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_3302 11670 +0.9 2.6 K07232 chaC cation transport protein ChaC compare
mRNA_7647 16015 +0.9 1.6 KOG2741 Dimeric dihydrodiol dehydrogenase compare
mRNA_7133 15501 +0.9 2.5 Hypothetical Protein compare
mRNA_6539 14907 +0.9 5.2 K19800 SCH9 serine/threonine protein kinase SCH9 compare
mRNA_2405 10773 +0.9 9.9 KOG1910 Uncharacterized conserved protein compare
mRNA_4137 12505 +0.9 7.0 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_7200 15568 +0.9 2.1 K14816 REI1 pre-60S factor REI1 compare
mRNA_7441 15809 +0.9 0.6 K08884 K08884 serine/threonine protein kinase, bacterial compare
mRNA_3405 11773 +0.9 0.7 K17922 SNX8, MVP1 sorting nexin-8 compare
mRNA_3392 11760 +0.9 1.8 HMMPfam-Caffeine-induced death protein 2-PF09774 compare
mRNA_6278 14646 +0.9 1.1 K17080 PHB1 prohibitin 1 compare
mRNA_4261 12629 +0.9 1.6 HMMPfam-NUDIX domain-PF00293,ProSitePatterns-Nudix box signature.-PS00893,ProSiteProfiles-Nudix hydrolase domain profile.-PS51462,SUPERFAMILY--SSF55811 compare
mRNA_7125 15493 +0.8 3.1 K11315 TADA3, ADA3, NGG1 transcriptional adapter 3 compare
mRNA_7449 15817 +0.8 1.9 BLAST GH19984 [Drosophila grimshawi] compare
mRNA_5102 13470 +0.8 7.6 KOG0619 FOG Leucine rich repeat compare
mRNA_1673 10041 +0.8 1.7 Hypothetical Protein compare
mRNA_1888 10256 +0.8 1.4 HMMPfam-Protein of unknown function (DUF2423)-PF10338 compare
mRNA_5518 13886 +0.8 2.1 SUPERFAMILY--SSF49599 compare
mRNA_2876 11244 +0.8 1.8 K18715 NUP159 nucleoporin NUP159 compare
mRNA_2437 10805 +0.8 4.9 Hypothetical Protein compare
mRNA_5055 13423 +0.8 3.4 KOG1289 Amino acid transporters compare
mRNA_1031 9399 +0.8 1.1 Hypothetical Protein compare
mRNA_1811 10179 +0.8 1.5 HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657 compare
mRNA_6582 14950 +0.8 1.8 K11517 HAO (S)-2-hydroxy-acid oxidase compare
mRNA_942 9310 +0.8 0.7 KOG1743 Ferric reductase-like proteins compare
mRNA_6369 14737 +0.8 1.9 Hypothetical Protein compare
mRNA_6304 14672 +0.8 3.1 Hypothetical Protein compare
mRNA_6831 15199 +0.8 2.0 HMMPfam-ATP synthase regulation protein NCA2-PF08637 compare
mRNA_7833 16201 +0.8 4.0 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_7486 15854 +0.8 2.3 K08287 E2.7.12.1 dual-specificity kinase compare
mRNA_7792 16160 +0.8 -0.1 Hypothetical Protein compare
mRNA_5126 13494 +0.8 1.8 Hypothetical Protein compare
mRNA_6310 14678 +0.8 0.4 Hypothetical Protein compare
mRNA_1934 10302 +0.8 5.0 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_3012 11380 +0.8 3.3 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit compare
mRNA_2798 11166 +0.8 1.1 K03537 POP5 ribonuclease P/MRP protein subunit POP5 compare
mRNA_8148 16516 +0.8 0.8 HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961 compare
mRNA_70 8438 +0.8 1.9 HMMPfam-Membrane-associating domain-PF01284 compare
mRNA_5460 13828 +0.8 1.7 Hypothetical Protein compare
mRNA_7017 15385 +0.8 1.6 K03574 mutT, NUDT15, MTH2 8-oxo-dGTP diphosphatase compare
mRNA_192 8560 +0.8 1.9 HMMPfam-SUR7/PalI family-PF06687 compare
mRNA_1178 9546 +0.8 2.0 Hypothetical Protein compare
mRNA_3727 12095 +0.8 2.0 SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047 compare
mRNA_6738 15106 +0.8 0.8 Hypothetical Protein compare
mRNA_2373 10741 +0.8 4.8 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_5174 13542 +0.8 2.5 Hypothetical Protein compare
mRNA_2677 11045 +0.8 1.8 ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157 compare
mRNA_3445 11813 +0.8 1.8 HMMPfam-BRO1-like domain-PF03097,ProSiteProfiles-BRO1 domain profile.-PS51180,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SMART-BRO1-like domain-SM01041 compare
mRNA_7000 15368 +0.8 6.8 K06653 PHO81 CDK inhibitor PHO81 compare
mRNA_6184 14552 +0.8 2.0 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in auxotrophy experiments

For auxotrophy unknown across organisms