Experiment setABuoy_All for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs No Buoyancy Separation

200 most detrimental genes:

  gene name fitness t score description  
mRNA_1130 9498 +3.6 1.6 KOG1773 Stress responsive protein compare
mRNA_5863 14231 +3.5 2.5 K09281 K09281 copper-fist transcription factor compare
mRNA_4966 13334 +3.0 2.6 Hypothetical Protein compare
mRNA_2647 11015 +3.0 1.8 Hypothetical Protein compare
mRNA_5652 14020 +2.7 2.3 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_6846 15214 +2.7 2.0 K02603 ORC1 origin recognition complex subunit 1 compare
mRNA_5144 13512 +2.5 2.1 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_3500 11868 +2.5 0.8 KOG2519 5'-3' exonuclease compare
mRNA_7392 15760 +2.4 1.1 Hypothetical Protein compare
mRNA_3819 12187 +2.4 2.3 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_1684 10052 +2.3 1.6 Hypothetical Protein compare
mRNA_5507 13875 +2.2 1.2 KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase compare
mRNA_578 8946 +2.2 2.2 K05687 PARK7 protein DJ-1 compare
mRNA_2549 10917 +2.2 1.2 HMMPfam-Chromatin modification-related protein EAF7-PF07904 compare
mRNA_8011 16379 +2.2 1.1 K09537 DNAJC17 DnaJ homolog subfamily C member 17 compare
mRNA_2358 10726 +2.1 1.0 Hypothetical Protein compare
mRNA_6027 14395 +2.1 2.5 HMMPfam-Cysteine-rich secretory protein family-PF00188,PRINTS-Allergen V5/Tpx-1 family signature-PR00837,SMART-SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.-SM00198,SUPERFAMILY--SSF55797 compare
mRNA_5934 14302 +2.1 3.0 HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506 compare
mRNA_7229 15597 +1.9 0.8 Hypothetical Protein compare
mRNA_7453 15821 +1.9 1.1 K14407 CSTF2, RNA15 cleavage stimulation factor subunit 2 compare
mRNA_7714 16082 +1.9 2.8 Hypothetical Protein compare
mRNA_7219 15587 +1.8 1.1 K15053 CHMP7 charged multivesicular body protein 7 compare
mRNA_2462 10830 +1.8 1.6 SUPERFAMILY--SSF52047 compare
mRNA_3232 11600 +1.8 0.9 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_2111 10479 +1.8 0.9 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 compare
mRNA_1618 9986 +1.8 1.3 Hypothetical Protein compare
mRNA_3383 11751 +1.7 0.7 HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383 compare
mRNA_3286 11654 +1.7 0.8 Hypothetical Protein compare
mRNA_5334 13702 +1.7 1.2 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin compare
mRNA_4569 12937 +1.7 1.5 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 compare
mRNA_7744 16112 +1.6 1.6 Hypothetical Protein compare
mRNA_1582 9950 +1.6 1.6 K01381 PEP4 saccharopepsin compare
mRNA_3848 12216 +1.6 3.3 KOG1817 Ribonuclease compare
mRNA_4866 13234 +1.6 0.9 KOG2881 Predicted membrane protein compare
mRNA_1261 9629 +1.6 1.0 K04712 DEGS sphingolipid Delta-4 desaturase compare
mRNA_4801 13169 +1.6 1.3 HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994 compare
mRNA_7419 15787 +1.5 1.0 Hypothetical Protein compare
mRNA_8137 16505 +1.5 0.7 K00586 DPH5 diphthine methyl ester synthase compare
mRNA_8289 16657 +1.5 7.0 KOG1601 GATA-4/5/6 transcription factors compare
mRNA_7236 15604 +1.5 1.2 Hypothetical Protein compare
mRNA_5077 13445 +1.5 1.0 KOG1663 O-methyltransferase compare
mRNA_229 8597 +1.5 1.1 Hypothetical Protein compare
mRNA_6560 14928 +1.5 1.6 Hypothetical Protein compare
mRNA_5536 13904 +1.5 1.3 Hypothetical Protein compare
mRNA_2131 10499 +1.5 3.1 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_4592 12960 +1.5 0.9 K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A compare
mRNA_6123 14491 +1.5 1.6 BLAST DNA polymerase [Rhizoctonia solani] compare
mRNA_5990 14358 +1.5 0.8 Hypothetical Protein compare
mRNA_5251 13619 +1.5 1.2 K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1 compare
mRNA_5543 13911 +1.5 1.2 K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme compare
mRNA_2352 10720 +1.5 1.6 K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e compare
mRNA_4673 13041 +1.4 0.9 K01069 E3.1.2.6, gloB hydroxyacylglutathione hydrolase compare
mRNA_1214 9582 +1.4 1.3 Hypothetical Protein compare
mRNA_4654 13022 +1.4 0.8 KOG4253 Tryptophan-rich basic nuclear protein compare
mRNA_7823 16191 +1.4 1.0 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_7528 15896 +1.4 0.5 Hypothetical Protein compare
mRNA_803 9171 +1.4 2.1 HMMPfam-Velvet factor-PF11754 compare
mRNA_645 9013 +1.4 0.4 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_2438 10806 +1.4 0.8 HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224 compare
mRNA_7818 16186 +1.4 0.9 K10865 MRE11 double-strand break repair protein MRE11 compare
mRNA_1393 9761 +1.4 0.6 Hypothetical Protein compare
mRNA_5129 13497 +1.4 2.8 Hypothetical Protein compare
mRNA_6725 15093 +1.3 0.2 K07575 K07575 PUA domain protein compare
mRNA_7103 15471 +1.3 1.2 Hypothetical Protein compare
mRNA_2291 10659 +1.3 3.3 HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300 compare
mRNA_157 8525 +1.3 2.4 KOG3066 Translin-associated protein X compare
mRNA_7078 15446 +1.3 0.7 Hypothetical Protein compare
mRNA_8242 16610 +1.3 1.3 KOG3319 Predicted membrane protein compare
mRNA_3354 11722 +1.3 1.2 KOG2395 Protein involved in vacuole import and degradation compare
mRNA_1660 10028 +1.3 2.4 Hypothetical Protein compare
mRNA_4671 13039 +1.3 1.7 Hypothetical Protein compare
mRNA_274 8642 +1.3 1.4 BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena] compare
mRNA_6485 14853 +1.2 2.4 K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase compare
mRNA_5930 14298 +1.2 1.2 Hypothetical Protein compare
mRNA_6882 15250 +1.2 2.1 Hypothetical Protein compare
mRNA_2708 11076 +1.2 2.1 Hypothetical Protein compare
mRNA_285 8653 +1.2 1.8 Hypothetical Protein compare
mRNA_1569 9937 +1.2 0.8 KOG3114 Uncharacterized conserved protein compare
mRNA_3585 11953 +1.2 0.5 KOG1339 Aspartyl protease compare
mRNA_109 8477 +1.2 1.0 Hypothetical Protein compare
mRNA_7948 16316 +1.2 0.6 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_7063 15431 +1.2 1.4 Hypothetical Protein compare
mRNA_4005 12373 +1.2 1.3 HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 compare
mRNA_5080 13448 +1.2 2.1 K12486 SMAP stromal membrane-associated protein compare
mRNA_1876 10244 +1.2 0.5 Hypothetical Protein compare
mRNA_5626 13994 +1.2 2.2 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_5421 13789 +1.2 1.3 Interpro Domain of unknown function (DUF5102) 0 compare
mRNA_3312 11680 +1.2 1.8 Hypothetical Protein compare
mRNA_2748 11116 +1.2 1.6 KOG3772 M-phase inducer phosphatase compare
mRNA_4192 12560 +1.2 0.7 K04797 pfdA, PFDN5 prefoldin alpha subunit compare
mRNA_1870 10238 +1.2 1.2 K18043 OCA1 tyrosine-protein phosphatase OCA1 compare
mRNA_5256 13624 +1.2 1.9 SUPERFAMILY--SSF53448 compare
mRNA_7373 15741 +1.2 3.3 HMMPfam-FAD binding domain-PF01494,PRINTS-Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature-PR00420,SUPERFAMILY--SSF51905 compare
mRNA_8258 16626 +1.1 1.6 Hypothetical Protein compare
mRNA_7989 16357 +1.1 1.5 HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_4009 12377 +1.1 1.2 K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1 compare
mRNA_7668 16036 +1.1 2.1 K18042 STYX serine/threonine/tyrosine-interacting protein compare
mRNA_460 8828 +1.1 2.5 K15177 LEO1 RNA polymerase-associated protein LEO1 compare
mRNA_7737 16105 +1.1 1.6 HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909 compare
mRNA_8246 16614 +1.1 1.2 Hypothetical Protein compare
mRNA_1266 9634 +1.1 1.8 K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase compare
mRNA_952 9320 +1.1 1.8 Hypothetical Protein compare
mRNA_1151 9519 +1.1 1.0 Hypothetical Protein compare
mRNA_967 9335 +1.1 1.1 HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452 compare
mRNA_597 8965 +1.1 2.5 ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616 compare
mRNA_916 9284 +1.1 3.5 HMMPfam-Activator of mitotic machinery Cdc14 phosphatase activation C-term-PF08632 compare
mRNA_1306 9674 +1.1 2.3 HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098 compare
mRNA_7333 15701 +1.1 2.4 SUPERFAMILY--SSF52047 compare
mRNA_7480 15848 +1.1 0.5 K01868 TARS, thrS threonyl-tRNA synthetase compare
mRNA_2660 11028 +1.0 2.2 Hypothetical Protein compare
mRNA_5713 14081 +1.0 0.5 K18819 GOLS inositol 3-alpha-galactosyltransferase compare
mRNA_5826 14194 +1.0 1.6 SUPERFAMILY--SSF52047 compare
mRNA_427 8795 +1.0 0.8 Hypothetical Protein compare
mRNA_406 8774 +1.0 0.9 HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735 compare
mRNA_702 9070 +1.0 1.0 BLAST RAN guanine nucleotide release factor [Moesziomyces a... compare
mRNA_4925 13293 +1.0 2.8 ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_6195 14563 +1.0 2.1 SUPERFAMILY--SSF52047 compare
mRNA_1834 10202 +1.0 2.0 Hypothetical Protein compare
mRNA_6808 15176 +1.0 2.1 K12856 PRPF8, PRP8 pre-mRNA-processing factor 8 compare
mRNA_8188 16556 +1.0 1.6 K05012 CLCN3_4_5 chloride channel 3/4/5 compare
mRNA_7568 15936 +1.0 0.4 K18753 ZFP36L butyrate response factor 1 compare
mRNA_2230 10598 +1.0 1.1 HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112 compare
mRNA_1007 9375 +1.0 1.1 HMMPfam-S1/P1 Nuclease-PF02265,SUPERFAMILY--SSF48537 compare
mRNA_4263 12631 +1.0 1.5 K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic compare
mRNA_559 8927 +1.0 0.7 KOG4672 Uncharacterized conserved low complexity protein compare
mRNA_7932 16300 +1.0 3.5 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_4794 13162 +1.0 2.4 Hypothetical Protein compare
mRNA_5509 13877 +1.0 1.5 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 compare
mRNA_2509 10877 +1.0 2.2 HMMPfam-PI31 proteasome regulator-PF08577,HMMPfam-PI31 proteasome regulator N-terminal-PF11566 compare
mRNA_4060 12428 +1.0 2.7 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_5344 13712 +1.0 1.9 KOG4176 Uncharacterized conserved protein compare
mRNA_3669 12037 +0.9 1.7 KOG1756 Histone 2A compare
mRNA_1272 9640 +0.9 2.1 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 compare
mRNA_7974 16342 +0.9 1.5 Hypothetical Protein compare
mRNA_4644 13012 +0.9 0.6 Hypothetical Protein compare
mRNA_4299 12667 +0.9 0.6 K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1 compare
mRNA_1697 10065 +0.9 3.0 BLAST Pro41 protein, putative [Rhizoctonia solani AG-3 Rhs1AP] compare
mRNA_3559 11927 +0.9 0.9 K18622 ADD adducin compare
mRNA_1547 9915 +0.9 1.3 K14402 CPSF2, CFT2 cleavage and polyadenylation specificity factor subunit 2 compare
mRNA_912 9280 +0.9 2.3 Hypothetical Protein compare
mRNA_2944 11312 +0.9 1.8 BLAST Putative CigA protein [Rhizopus microsporus] compare
mRNA_5807 14175 +0.9 0.9 HMMPfam-Protein of unknown function (DUF2638)-PF10937 compare
mRNA_7468 15836 +0.9 3.1 Hypothetical Protein compare
mRNA_5199 13567 +0.9 4.5 K01210 E3.2.1.58 glucan 1,3-beta-glucosidase compare
mRNA_5868 14236 +0.9 1.9 HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197 compare
mRNA_5066 13434 +0.9 2.5 KOG3170 Conserved phosducin-like protein compare
mRNA_1538 9906 +0.9 0.8 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_4878 13246 +0.9 5.3 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_1141 9509 +0.9 1.2 ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257 compare
mRNA_7089 15457 +0.9 0.7 Hypothetical Protein compare
mRNA_4917 13285 +0.9 1.2 KOG2920 Predicted methyltransferase compare
mRNA_1993 10361 +0.9 0.6 Hypothetical Protein compare
mRNA_7881 16249 +0.9 0.7 Hypothetical Protein compare
mRNA_1705 10073 +0.9 1.5 K03264 EIF6 translation initiation factor 6 compare
mRNA_2189 10557 +0.9 1.6 K11236 CDC24 cell division control protein 24 compare
mRNA_256 8624 +0.9 0.8 K11254 H4 histone H4 compare
mRNA_7116 15484 +0.9 3.4 K04393 CDC42 cell division control protein 42 compare
mRNA_8467 16835 +0.9 1.3 Hypothetical Protein compare
mRNA_2876 11244 +0.9 1.4 K18715 NUP159 nucleoporin NUP159 compare
mRNA_7198 15566 +0.9 1.5 Hypothetical Protein compare
mRNA_1032 9400 +0.9 0.9 Hypothetical Protein compare
mRNA_5606 13974 +0.9 1.6 HMMPfam-Glycosyl hydrolase family 61-PF03443 compare
mRNA_573 8941 +0.9 1.7 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_2661 11029 +0.9 2.4 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_7901 16269 +0.9 0.5 KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) compare
mRNA_4343 12711 +0.9 1.9 K15206 TFC7 transcription factor C subunit 7 compare
mRNA_8205 16573 +0.9 0.4 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_3392 11760 +0.9 1.6 HMMPfam-Caffeine-induced death protein 2-PF09774 compare
mRNA_6700 15068 +0.8 1.6 HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556 compare
mRNA_6130 14498 +0.8 1.6 K11786 STH1_SNF2 ATP-dependent helicase STH1/SNF2 compare
mRNA_7924 16292 +0.8 1.7 Hypothetical Protein compare
mRNA_346 8714 +0.8 1.6 KOG3113 Uncharacterized conserved protein compare
mRNA_2070 10438 +0.8 2.4 Hypothetical Protein compare
mRNA_2141 10509 +0.8 2.2 SUPERFAMILY--SSF52047 compare
mRNA_1202 9570 +0.8 1.5 K11253 H3 histone H3 compare
mRNA_6443 14811 +0.8 0.3 K10427 DCTN5 dynactin 5 compare
mRNA_340 8708 +0.8 2.8 KOG1271 Methyltransferases compare
mRNA_4538 12906 +0.8 1.0 KOG2112 Lysophospholipase compare
mRNA_286 8654 +0.8 2.2 SUPERFAMILY--SSF52047 compare
mRNA_2563 10931 +0.8 2.7 Interpro F-box-like compare
mRNA_2587 10955 +0.8 1.4 K04368 MAP2K1, MEK1 mitogen-activated protein kinase kinase 1 compare
mRNA_7087 15455 +0.8 1.8 Hypothetical Protein compare
mRNA_6411 14779 +0.8 0.4 BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M... compare
mRNA_5797 14165 +0.8 3.1 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 compare
mRNA_2201 10569 +0.8 1.6 K03005 RPA49, POLR1E DNA-directed RNA polymerase I subunit RPA49 compare
mRNA_4414 12782 +0.8 2.0 BLAST DiGeorge syndrome critical region 6 (DGCR6) protein [... compare
mRNA_1742 10110 +0.8 1.6 SUPERFAMILY--SSF48097 compare
mRNA_8091 16459 +0.8 2.7 K15463 RIT1 tRNA A64-2'-O-ribosylphosphate transferase compare
mRNA_4367 12735 +0.8 3.0 K08856 STK16 serine/threonine kinase 16 compare
mRNA_6951 15319 +0.8 1.5 ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065 compare
mRNA_5491 13859 +0.8 2.1 Hypothetical Protein compare
mRNA_5611 13979 +0.8 0.2 HMMPfam-Protein of unknown function (DUF2433)-PF10360 compare
mRNA_3956 12324 +0.8 1.8 KOG1843 Uncharacterized conserved protein compare
mRNA_5723 14091 +0.8 1.6 K15447 TRM44, METTL19 tRNASer (uridine44-2'-O)-methyltransferase compare
mRNA_7583 15951 +0.8 1.8 HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713 compare
mRNA_8031 16399 +0.8 2.4 K14325 RNPS1 RNA-binding protein with serine-rich domain 1 compare
mRNA_6903 15271 +0.8 1.8 Hypothetical Protein compare
mRNA_2681 11049 +0.8 1.5 Hypothetical Protein compare
mRNA_5650 14018 +0.8 2.6 Hypothetical Protein compare
mRNA_715 9083 +0.8 2.0 KOG2893 Zn finger protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in buoyancy on lipid accumulation experiments

For buoyancy on lipid accumulation CN120 across organisms