Experiment setABuoy_Bot for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs Low Buoyancy

200 most detrimental genes:

  gene name fitness t score description  
mRNA_7229 15597 +3.6 1.7 Hypothetical Protein compare
mRNA_1130 9498 +3.4 1.2 KOG1773 Stress responsive protein compare
mRNA_5863 14231 +3.4 2.9 K09281 K09281 copper-fist transcription factor compare
mRNA_5652 14020 +3.2 3.4 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_4966 13334 +3.1 3.0 Hypothetical Protein compare
mRNA_3500 11868 +3.0 1.2 KOG2519 5'-3' exonuclease compare
mRNA_2647 11015 +2.9 1.9 Hypothetical Protein compare
mRNA_3383 11751 +2.8 1.1 HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383 compare
mRNA_5354 13722 +2.4 0.7 KOG0557 Dihydrolipoamide acetyltransferase compare
mRNA_7219 15587 +2.4 1.4 K15053 CHMP7 charged multivesicular body protein 7 compare
mRNA_7528 15896 +2.4 0.5 Hypothetical Protein compare
mRNA_7078 15446 +2.4 1.4 Hypothetical Protein compare
mRNA_6443 14811 +2.3 0.8 K10427 DCTN5 dynactin 5 compare
mRNA_7392 15760 +2.2 0.9 Hypothetical Protein compare
mRNA_4192 12560 +2.1 1.4 K04797 pfdA, PFDN5 prefoldin alpha subunit compare
mRNA_6212 14580 +2.1 1.4 SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_8011 16379 +2.1 1.1 K09537 DNAJC17 DnaJ homolog subfamily C member 17 compare
mRNA_5507 13875 +2.1 1.1 KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase compare
mRNA_5334 13702 +2.1 1.3 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin compare
mRNA_4290 12658 +2.1 1.7 Hypothetical Protein compare
mRNA_4349 12717 +2.1 1.6 K02873 RP-L13e, RPL13 large subunit ribosomal protein L13e compare
mRNA_1569 9937 +2.1 1.2 KOG3114 Uncharacterized conserved protein compare
mRNA_4693 13061 +2.0 1.4 Hypothetical Protein compare
mRNA_2459 10827 +2.0 1.4 KOG2747 Histone acetyltransferase (MYST family) compare
mRNA_1686 10054 +2.0 1.4 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_5077 13445 +2.0 1.8 KOG1663 O-methyltransferase compare
mRNA_7792 16160 +1.9 0.9 Hypothetical Protein compare
mRNA_1684 10052 +1.9 1.5 Hypothetical Protein compare
mRNA_5552 13920 +1.9 3.0 K03360 GRR1 F-box and leucine-rich repeat protein GRR1 compare
mRNA_5620 13988 +1.9 1.8 HMMPfam-GRF zinc finger-PF06839 compare
mRNA_6846 15214 +1.9 1.4 K02603 ORC1 origin recognition complex subunit 1 compare
mRNA_2097 10465 +1.9 0.9 K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase compare
mRNA_5826 14194 +1.9 2.8 SUPERFAMILY--SSF52047 compare
mRNA_3286 11654 +1.9 1.0 Hypothetical Protein compare
mRNA_3819 12187 +1.8 2.1 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_3251 11619 +1.8 2.8 K19986 EXOC8, SEC84 exocyst complex component 8 compare
mRNA_3786 12154 +1.8 4.7 K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+) compare
mRNA_5624 13992 +1.8 2.0 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_7095 15463 +1.7 1.5 Hypothetical Protein compare
mRNA_1864 10232 +1.7 1.1 SUPERFAMILY--SSF53300 compare
mRNA_7818 16186 +1.7 1.8 K10865 MRE11 double-strand break repair protein MRE11 compare
mRNA_1393 9761 +1.7 1.3 Hypothetical Protein compare
mRNA_6027 14395 +1.7 2.0 HMMPfam-Cysteine-rich secretory protein family-PF00188,PRINTS-Allergen V5/Tpx-1 family signature-PR00837,SMART-SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.-SM00198,SUPERFAMILY--SSF55797 compare
mRNA_3354 11722 +1.7 1.7 KOG2395 Protein involved in vacuole import and degradation compare
mRNA_1007 9375 +1.7 2.4 HMMPfam-S1/P1 Nuclease-PF02265,SUPERFAMILY--SSF48537 compare
mRNA_2358 10726 +1.7 0.7 Hypothetical Protein compare
mRNA_327 8695 +1.7 1.1 KOG0378 40S ribosomal protein S4 compare
mRNA_578 8946 +1.7 1.3 K05687 PARK7 protein DJ-1 compare
mRNA_4644 13012 +1.7 1.4 Hypothetical Protein compare
mRNA_6975 15343 +1.6 11.5 Hypothetical Protein compare
mRNA_7881 16249 +1.6 1.6 Hypothetical Protein compare
mRNA_5084 13452 +1.6 7.4 Hypothetical Protein compare
mRNA_5543 13911 +1.6 1.8 K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme compare
mRNA_2111 10479 +1.6 0.9 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 compare
mRNA_5370 13738 +1.6 1.4 K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 compare
mRNA_157 8525 +1.6 4.0 KOG3066 Translin-associated protein X compare
mRNA_3848 12216 +1.6 3.8 KOG1817 Ribonuclease compare
mRNA_7433 15801 +1.5 0.5 K10356 MYO1 myosin I compare
mRNA_5725 14093 +1.5 0.4 K03234 EEF2 elongation factor 2 compare
mRNA_937 9305 +1.5 5.1 KOG1721 FOG Zn-finger compare
mRNA_2701 11069 +1.5 0.9 HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448 compare
mRNA_7568 15936 +1.5 0.5 K18753 ZFP36L butyrate response factor 1 compare
mRNA_3956 12324 +1.5 2.3 KOG1843 Uncharacterized conserved protein compare
mRNA_1253 9621 +1.5 3.3 K04554 UBE2J2, NCUBE2, UBC6 ubiquitin-conjugating enzyme E2 J2 compare
mRNA_6220 14588 +1.5 1.5 Hypothetical Protein compare
mRNA_2660 11028 +1.5 3.5 Hypothetical Protein compare
mRNA_109 8477 +1.5 1.0 Hypothetical Protein compare
mRNA_5136 13504 +1.4 1.9 BLAST MYB DNA-binding domain protein [Macrophomina phaseoli... compare
mRNA_5653 14021 +1.4 4.1 Hypothetical Protein compare
mRNA_3833 12201 +1.4 1.3 K15196 BRF1, GTF3B transcription factor IIIB 90 kDa subunit compare
mRNA_6872 15240 +1.4 1.9 KOG3035 Isoamyl acetate-hydrolyzing esterase compare
mRNA_7974 16342 +1.4 2.4 Hypothetical Protein compare
mRNA_1134 9502 +1.4 1.8 K10685 UBLE1B, SAE2, UBA2 ubiquitin-like 1-activating enzyme E1 B compare
mRNA_7796 16164 +1.4 0.4 K11322 EPC enhancer of polycomb-like protein compare
mRNA_8258 16626 +1.4 2.2 Hypothetical Protein compare
mRNA_6123 14491 +1.4 1.2 BLAST DNA polymerase [Rhizoctonia solani] compare
mRNA_6532 14900 +1.3 2.1 K11352 NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12 compare
mRNA_2311 10679 +1.3 3.1 K20195 MON1 vacuolar fusion protein MON1 compare
mRNA_427 8795 +1.3 1.1 Hypothetical Protein compare
mRNA_999 9367 +1.3 3.8 HMMPfam-PAPA-1-like conserved region-PF04795 compare
mRNA_2748 11116 +1.3 1.9 KOG3772 M-phase inducer phosphatase compare
mRNA_5369 13737 +1.3 0.8 K03627 MBF1 putative transcription factor compare
mRNA_121 8489 +1.3 1.6 BLAST Pc20g03530 [Penicillium rubens Wisconsin 54-1255] compare
mRNA_1032 9400 +1.3 1.5 Hypothetical Protein compare
mRNA_1618 9986 +1.3 1.2 Hypothetical Protein compare
mRNA_7106 15474 +1.3 1.4 K11313 SUPT3H, SPT3 transcription initiation protein SPT3 compare
mRNA_5934 14302 +1.3 1.8 HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506 compare
mRNA_8008 16376 +1.3 1.5 BLAST CAMK/CAMKL protein kinase [Microbotryum lychnidis-dio... compare
mRNA_2352 10720 +1.3 1.7 K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e compare
mRNA_5914 14282 +1.3 1.7 HMMPfam-Nuclear protein Es2-PF09751 compare
mRNA_6725 15093 +1.3 0.1 K07575 K07575 PUA domain protein compare
mRNA_1876 10244 +1.3 0.4 Hypothetical Protein compare
mRNA_70 8438 +1.2 4.1 HMMPfam-Membrane-associating domain-PF01284 compare
mRNA_5688 14056 +1.2 1.5 K12199 VTA1, LIP5 vacuolar protein sorting-associated protein VTA1 compare
mRNA_7453 15821 +1.2 0.4 K14407 CSTF2, RNA15 cleavage stimulation factor subunit 2 compare
mRNA_5868 14236 +1.2 2.3 HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197 compare
mRNA_3687 12055 +1.2 1.9 K14837 NOP12 nucleolar protein 12 compare
mRNA_8205 16573 +1.2 1.0 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_7419 15787 +1.2 0.9 Hypothetical Protein compare
mRNA_4065 12433 +1.2 1.9 KOG1198 Zinc-binding oxidoreductase compare
mRNA_1319 9687 +1.2 0.9 KOG0404 Thioredoxin reductase compare
mRNA_7921 16289 +1.2 0.5 KOG3022 Predicted ATPase, nucleotide-binding compare
mRNA_6649 15017 +1.2 0.4 K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3 compare
mRNA_963 9331 +1.2 3.8 K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29 compare
mRNA_5509 13877 +1.2 2.0 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 compare
mRNA_1483 9851 +1.2 0.8 BLAST Protein priB [Grifola frondosa] compare
mRNA_2521 10889 +1.2 0.4 BLAST beta-glucosidase 1 precursor [Aspergillus rambellii] compare
mRNA_895 9263 +1.2 0.6 Hypothetical Protein compare
mRNA_138 8506 +1.2 3.5 KOG4473 Uncharacterized membrane protein compare
mRNA_2551 10919 +1.2 1.2 K00799 GST, gst glutathione S-transferase compare
mRNA_2708 11076 +1.2 2.0 Hypothetical Protein compare
mRNA_34 8402 +1.2 0.5 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_6560 14928 +1.2 1.6 Hypothetical Protein compare
mRNA_4654 13022 +1.2 0.3 KOG4253 Tryptophan-rich basic nuclear protein compare
mRNA_1202 9570 +1.2 2.5 K11253 H3 histone H3 compare
mRNA_5765 14133 +1.2 2.8 Interpro Promethin compare
mRNA_5930 14298 +1.2 1.2 Hypothetical Protein compare
mRNA_5626 13994 +1.2 2.3 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_4777 13145 +1.2 1.1 Hypothetical Protein compare
mRNA_3232 11600 +1.2 0.6 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_1761 10129 +1.2 1.2 K07189 PPP1R3 protein phosphatase 1 regulatory subunit 3A/B/C/D/E compare
mRNA_5254 13622 +1.1 2.2 HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839 compare
mRNA_2528 10896 +1.1 2.3 HMMPfam-Fungal chitosanase of glycosyl hydrolase group 75-PF07335 compare
mRNA_8467 16835 +1.1 1.9 Hypothetical Protein compare
mRNA_7087 15455 +1.1 2.1 Hypothetical Protein compare
mRNA_2675 11043 +1.1 4.4 HMMPfam-Putative adipose-regulatory protein (Seipin)-PF06775 compare
mRNA_573 8941 +1.1 2.4 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_889 9257 +1.1 3.1 HMMPfam-Ribonuclease III domain-PF00636,ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065 compare
mRNA_2462 10830 +1.1 0.9 SUPERFAMILY--SSF52047 compare
mRNA_8242 16610 +1.1 1.3 KOG3319 Predicted membrane protein compare
mRNA_1321 9689 +1.1 1.0 K01687 ilvD dihydroxy-acid dehydratase compare
mRNA_5536 13904 +1.1 1.1 Hypothetical Protein compare
mRNA_5144 13512 +1.1 0.6 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_4118 12486 +1.1 1.6 Hypothetical Protein compare
mRNA_1891 10259 +1.1 0.3 K03083 GSK3B glycogen synthase kinase 3 beta compare
mRNA_1642 10010 +1.1 5.1 K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4 compare
mRNA_7308 15676 +1.1 3.7 Hypothetical Protein compare
mRNA_4009 12377 +1.1 1.2 K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1 compare
mRNA_3818 12186 +1.1 4.0 K09650 PARL, PSARL, PCP1 rhomboid-like protein compare
mRNA_1697 10065 +1.1 2.7 BLAST Pro41 protein, putative [Rhizoctonia solani AG-3 Rhs1AP] compare
mRNA_2438 10806 +1.1 0.7 HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224 compare
mRNA_645 9013 +1.1 0.2 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_1359 9727 +1.1 4.2 K06018 PPN1 endopolyphosphatase compare
mRNA_850 9218 +1.1 1.9 SUPERFAMILY--SSF52047 compare
mRNA_3216 11584 +1.1 2.3 K12881 THOC4, ALY THO complex subunit 4 compare
mRNA_2291 10659 +1.1 2.8 HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300 compare
mRNA_7932 16300 +1.0 3.7 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_5671 14039 +1.0 2.2 K11675 IES1 Ino eighty subunit 1 compare
mRNA_5020 13388 +1.0 2.4 K20178 VPS8 vacuolar protein sorting-associated protein 8 compare
mRNA_4592 12960 +1.0 0.6 K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A compare
mRNA_2710 11078 +1.0 2.4 BLAST putative protein (N-terminal fragment) [Melanopsichiu... compare
mRNA_2913 11281 +1.0 4.3 K13703 ABHD11 abhydrolase domain-containing protein 11 compare
mRNA_1426 9794 +1.0 3.1 Hypothetical Protein compare
mRNA_3894 12262 +1.0 4.1 SUPERFAMILY--SSF54695 compare
mRNA_7417 15785 +1.0 1.5 K03353 APC6, CDC16 anaphase-promoting complex subunit 6 compare
mRNA_549 8917 +1.0 1.0 K12618 XRN1, SEP1, KEM1 5'-3' exoribonuclease 1 compare
mRNA_3520 11888 +1.0 0.4 BLAST mannose-6-phosphate isomerase, class I [Kwoniella... compare
mRNA_7620 15988 +1.0 2.5 Hypothetical Protein compare
mRNA_714 9082 +1.0 3.8 KOG1201 Hydroxysteroid 17-beta dehydrogenase 11 compare
mRNA_4392 12760 +1.0 0.9 KOG3069 Peroxisomal NUDIX hydrolase compare
mRNA_1945 10313 +1.0 4.2 Hypothetical Protein compare
mRNA_823 9191 +1.0 4.4 HMMPfam-Fungal domain of unknown function (DUF1712)-PF08217 compare
mRNA_936 9304 +1.0 3.1 K10365 CAPZB capping protein (actin filament) muscle Z-line, beta compare
mRNA_5713 14081 +1.0 0.3 K18819 GOLS inositol 3-alpha-galactosyltransferase compare
mRNA_7146 15514 +1.0 2.5 Hypothetical Protein compare
mRNA_7656 16024 +1.0 1.4 Hypothetical Protein compare
mRNA_7833 16201 +1.0 4.5 HMMPfam-Cryptococcal mannosyltransferase 1-PF11735 compare
mRNA_3085 11453 +1.0 5.4 K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit compare
mRNA_1796 10164 +1.0 2.3 K10878 SPO11 meiotic recombination protein SPO11 compare
mRNA_6457 14825 +1.0 1.3 Hypothetical Protein compare
mRNA_1500 9868 +1.0 1.7 K05770 TSPO, BZRP benzodiazapine receptor compare
mRNA_5570 13938 +1.0 0.7 K06067 HDAC1_2 histone deacetylase 1/2 compare
mRNA_5098 13466 +1.0 2.6 K08065 NFYB nuclear transcription Y subunit beta compare
mRNA_8018 16386 +1.0 1.5 Hypothetical Protein compare
mRNA_2828 11196 +1.0 1.5 Hypothetical Protein compare
mRNA_6528 14896 +1.0 1.1 K01514 PRUNE, PPX1 exopolyphosphatase compare
mRNA_113 8481 +1.0 2.0 KOG0209 P-type ATPase compare
mRNA_4925 13293 +1.0 2.7 ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_7583 15951 +1.0 2.4 HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713 compare
mRNA_5560 13928 +1.0 1.2 BLAST PROTEIN D2013.6 [Ceraceosorus bombacis] compare
mRNA_3624 11992 +1.0 0.7 SUPERFAMILY--SSF52047 compare
mRNA_7823 16191 +1.0 0.4 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_538 8906 +1.0 2.5 Hypothetical Protein compare
mRNA_2960 11328 +1.0 1.5 KOG2617 Citrate synthase compare
mRNA_3132 11500 +1.0 1.3 Hypothetical Protein compare
mRNA_8376 16744 +1.0 0.8 Hypothetical Protein compare
mRNA_6229 14597 +1.0 5.1 K01895 ACSS, acs acetyl-CoA synthetase compare
mRNA_4236 12604 +1.0 2.3 HMMPfam-pinin/SDK/memA/ protein conserved region-PF04696 compare
mRNA_6485 14853 +1.0 2.1 K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase compare
mRNA_6310 14678 +1.0 0.3 Hypothetical Protein compare
mRNA_925 9293 +1.0 2.0 K10704 UBE2V ubiquitin-conjugating enzyme E2 variant compare
mRNA_2478 10846 +1.0 2.8 K20293 COG6, COD2 conserved oligomeric Golgi complex subunit 6 compare
mRNA_4866 13234 +1.0 0.5 KOG2881 Predicted membrane protein compare
mRNA_7156 15524 +1.0 4.3 K20102 YTHDF YTH domain-containing family protein compare
mRNA_1382 9750 +1.0 5.6 K11805 WDR68, HAN11 WD repeat-containing protein 68 compare
mRNA_4874 13242 +1.0 1.1 KOG2922 Uncharacterized conserved protein compare
mRNA_2319 10687 +1.0 2.4 KOG3872 FOG FHA domain compare
mRNA_4801 13169 +0.9 0.5 HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994 compare
mRNA_5797 14165 +0.9 2.9 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 compare
mRNA_1205 9573 +0.9 3.6 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in buoyancy on lipid accumulation experiments

For buoyancy on lipid accumulation CN120 across organisms