Experiment setABuoy_Med for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs Median Buoyancy

200 most detrimental genes:

  gene name fitness t score description  
mRNA_4966 13334 +3.6 3.3 Hypothetical Protein compare
mRNA_3383 11751 +3.4 1.7 HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383 compare
mRNA_5863 14231 +3.2 2.8 K09281 K09281 copper-fist transcription factor compare
mRNA_7392 15760 +3.0 1.5 Hypothetical Protein compare
mRNA_4693 13061 +2.9 2.8 Hypothetical Protein compare
mRNA_2647 11015 +2.9 1.7 Hypothetical Protein compare
mRNA_1130 9498 +2.8 1.2 KOG1773 Stress responsive protein compare
mRNA_7219 15587 +2.7 1.8 K15053 CHMP7 charged multivesicular body protein 7 compare
mRNA_3500 11868 +2.7 1.0 KOG2519 5'-3' exonuclease compare
mRNA_7229 15597 +2.2 0.6 Hypothetical Protein compare
mRNA_5077 13445 +2.2 1.0 KOG1663 O-methyltransferase compare
mRNA_5370 13738 +2.2 1.9 K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 compare
mRNA_6212 14580 +2.1 1.5 SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_6846 15214 +2.1 1.5 K02603 ORC1 origin recognition complex subunit 1 compare
mRNA_5144 13512 +2.0 2.0 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_7792 16160 +2.0 1.1 Hypothetical Protein compare
mRNA_645 9013 +1.9 1.2 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_7453 15821 +1.9 1.3 K14407 CSTF2, RNA15 cleavage stimulation factor subunit 2 compare
mRNA_157 8525 +1.9 4.4 KOG3066 Translin-associated protein X compare
mRNA_7921 16289 +1.9 0.9 KOG3022 Predicted ATPase, nucleotide-binding compare
mRNA_5507 13875 +1.9 1.1 KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase compare
mRNA_3286 11654 +1.9 1.0 Hypothetical Protein compare
mRNA_8011 16379 +1.9 1.0 K09537 DNAJC17 DnaJ homolog subfamily C member 17 compare
mRNA_1261 9629 +1.9 1.5 K04712 DEGS sphingolipid Delta-4 desaturase compare
mRNA_2358 10726 +1.9 1.1 Hypothetical Protein compare
mRNA_7666 16034 +1.8 1.2 K20184 VPS41 vacuolar protein sorting-associated protein 41 compare
mRNA_4592 12960 +1.8 1.2 K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A compare
mRNA_1864 10232 +1.8 1.4 SUPERFAMILY--SSF53300 compare
mRNA_1761 10129 +1.8 2.2 K07189 PPP1R3 protein phosphatase 1 regulatory subunit 3A/B/C/D/E compare
mRNA_1684 10052 +1.8 1.4 Hypothetical Protein compare
mRNA_3354 11722 +1.8 2.0 KOG2395 Protein involved in vacuole import and degradation compare
mRNA_4686 13054 +1.7 2.2 HMMPfam-COMPASS (Complex proteins associated with Set1p) component shg1-PF05205 compare
mRNA_5334 13702 +1.7 1.1 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin compare
mRNA_7823 16191 +1.7 1.3 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_7078 15446 +1.7 0.8 Hypothetical Protein compare
mRNA_2459 10827 +1.7 1.1 KOG2747 Histone acetyltransferase (MYST family) compare
mRNA_4654 13022 +1.7 0.6 KOG4253 Tryptophan-rich basic nuclear protein compare
mRNA_7369 15737 +1.7 1.0 KOG1203 Predicted dehydrogenase compare
mRNA_1007 9375 +1.6 2.3 HMMPfam-S1/P1 Nuclease-PF02265,SUPERFAMILY--SSF48537 compare
mRNA_5080 13448 +1.6 3.4 K12486 SMAP stromal membrane-associated protein compare
mRNA_6027 14395 +1.6 1.8 HMMPfam-Cysteine-rich secretory protein family-PF00188,PRINTS-Allergen V5/Tpx-1 family signature-PR00837,SMART-SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.-SM00198,SUPERFAMILY--SSF55797 compare
mRNA_8205 16573 +1.6 1.5 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_1569 9937 +1.6 1.0 KOG3114 Uncharacterized conserved protein compare
mRNA_6443 14811 +1.6 0.6 K10427 DCTN5 dynactin 5 compare
mRNA_7419 15787 +1.5 1.2 Hypothetical Protein compare
mRNA_1214 9582 +1.5 1.7 Hypothetical Protein compare
mRNA_578 8946 +1.5 1.3 K05687 PARK7 protein DJ-1 compare
mRNA_8453 16821 +1.5 4.2 Hypothetical Protein compare
mRNA_4866 13234 +1.5 1.0 KOG2881 Predicted membrane protein compare
mRNA_961 9329 +1.5 2.1 Hypothetical Protein compare
mRNA_5543 13911 +1.5 1.3 K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme compare
mRNA_8376 16744 +1.5 1.3 Hypothetical Protein compare
mRNA_1618 9986 +1.5 1.5 Hypothetical Protein compare
mRNA_3848 12216 +1.5 3.6 KOG1817 Ribonuclease compare
mRNA_7714 16082 +1.4 2.1 Hypothetical Protein compare
mRNA_6560 14928 +1.4 1.9 Hypothetical Protein compare
mRNA_1393 9761 +1.4 1.1 Hypothetical Protein compare
mRNA_8242 16610 +1.4 1.6 KOG3319 Predicted membrane protein compare
mRNA_5571 13939 +1.4 1.9 K14546 UTP5, WDR43 U3 small nucleolar RNA-associated protein 5 compare
mRNA_549 8917 +1.4 1.4 K12618 XRN1, SEP1, KEM1 5'-3' exoribonuclease 1 compare
mRNA_5929 14297 +1.4 1.4 Hypothetical Protein compare
mRNA_1993 10361 +1.3 1.4 Hypothetical Protein compare
mRNA_3956 12324 +1.3 2.3 KOG1843 Uncharacterized conserved protein compare
mRNA_7568 15936 +1.3 0.5 K18753 ZFP36L butyrate response factor 1 compare
mRNA_229 8597 +1.3 1.2 Hypothetical Protein compare
mRNA_4538 12906 +1.3 2.4 KOG2112 Lysophospholipase compare
mRNA_7948 16316 +1.3 0.5 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_1596 9964 +1.3 0.5 K14557 UTP6 U3 small nucleolar RNA-associated protein 6 compare
mRNA_702 9070 +1.3 1.8 BLAST RAN guanine nucleotide release factor [Moesziomyces a... compare
mRNA_5713 14081 +1.3 0.9 K18819 GOLS inositol 3-alpha-galactosyltransferase compare
mRNA_4392 12760 +1.3 1.5 KOG3069 Peroxisomal NUDIX hydrolase compare
mRNA_4925 13293 +1.3 3.7 ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_5930 14298 +1.3 1.5 Hypothetical Protein compare
mRNA_8307 16675 +1.3 2.2 Hypothetical Protein compare
mRNA_4801 13169 +1.3 0.9 HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994 compare
mRNA_8289 16657 +1.2 5.8 KOG1601 GATA-4/5/6 transcription factors compare
mRNA_4730 13098 +1.2 2.5 K06062 PCAF, KAT2, GCN5 histone acetyltransferase compare
mRNA_2111 10479 +1.2 0.8 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 compare
mRNA_5626 13994 +1.2 2.2 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_5826 14194 +1.2 1.9 SUPERFAMILY--SSF52047 compare
mRNA_556 8924 +1.2 3.1 HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729 compare
mRNA_1808 10176 +1.2 3.4 Hypothetical Protein compare
mRNA_4498 12866 +1.2 2.0 Hypothetical Protein compare
mRNA_5725 14093 +1.2 0.4 K03234 EEF2 elongation factor 2 compare
mRNA_1697 10065 +1.2 3.9 BLAST Pro41 protein, putative [Rhizoctonia solani AG-3 Rhs1AP] compare
mRNA_3819 12187 +1.2 1.1 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_2352 10720 +1.2 1.5 K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e compare
mRNA_7818 16186 +1.2 0.8 K10865 MRE11 double-strand break repair protein MRE11 compare
mRNA_1301 9669 +1.2 0.8 K06947 GRC3, NOL9 polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 compare
mRNA_936 9304 +1.2 3.1 K10365 CAPZB capping protein (actin filament) muscle Z-line, beta compare
mRNA_1876 10244 +1.2 0.2 Hypothetical Protein compare
mRNA_967 9335 +1.2 1.5 HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452 compare
mRNA_8137 16505 +1.2 0.7 K00586 DPH5 diphthine methyl ester synthase compare
mRNA_5934 14302 +1.2 1.5 HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506 compare
mRNA_6130 14498 +1.2 1.8 K11786 STH1_SNF2 ATP-dependent helicase STH1/SNF2 compare
mRNA_4290 12658 +1.2 0.4 Hypothetical Protein compare
mRNA_3822 12190 +1.2 1.8 HMMPfam-Protein of unknown function (DUF2781)-PF10914,PIRSF--PIRSF031032 compare
mRNA_2495 10863 +1.2 3.4 K03507 DPB11 DNA replication regulator DPB11 compare
mRNA_6457 14825 +1.1 1.4 Hypothetical Protein compare
mRNA_3657 12025 +1.1 0.9 Hypothetical Protein compare
mRNA_978 9346 +1.1 1.2 Hypothetical Protein compare
mRNA_2660 11028 +1.1 3.2 Hypothetical Protein compare
mRNA_5496 13864 +1.1 1.1 HMMPfam-HSF-type DNA-binding-PF00447,SUPERFAMILY--SSF46785 compare
mRNA_7737 16105 +1.1 1.6 HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909 compare
mRNA_7974 16342 +1.1 1.6 Hypothetical Protein compare
mRNA_1243 9611 +1.1 1.9 K02493 hemK, prmC, HEMK release factor glutamine methyltransferase compare
mRNA_5868 14236 +1.1 1.6 HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197 compare
mRNA_4569 12937 +1.1 1.1 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 compare
mRNA_7095 15463 +1.1 0.9 Hypothetical Protein compare
mRNA_1976 10344 +1.1 0.7 Hypothetical Protein compare
mRNA_4065 12433 +1.1 1.5 KOG1198 Zinc-binding oxidoreductase compare
mRNA_3520 11888 +1.1 0.7 BLAST mannose-6-phosphate isomerase, class I [Kwoniella... compare
mRNA_2661 11029 +1.1 3.3 Interpro GDP-fucose protein O-fucosyltransferase compare
mRNA_2551 10919 +1.1 1.1 K00799 GST, gst glutathione S-transferase compare
mRNA_8018 16386 +1.1 1.7 Hypothetical Protein compare
mRNA_7519 15887 +1.1 0.8 HMMPfam-Protoglobin-PF11563 compare
mRNA_3699 12067 +1.1 2.9 KOG0870 DNA polymerase epsilon, subunit D compare
mRNA_4644 13012 +1.1 1.0 Hypothetical Protein compare
mRNA_6371 14739 +1.1 2.3 HMMPfam-SET domain-PF00856,ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199 compare
mRNA_3687 12055 +1.1 1.0 K14837 NOP12 nucleolar protein 12 compare
mRNA_8248 16616 +1.1 2.7 KOG2945 Predicted RNA-binding protein compare
mRNA_34 8402 +1.1 0.7 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_2230 10598 +1.1 1.4 HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112 compare
mRNA_6872 15240 +1.0 1.3 KOG3035 Isoamyl acetate-hydrolyzing esterase compare
mRNA_5421 13789 +1.0 1.6 Interpro Domain of unknown function (DUF5102) 0 compare
mRNA_6411 14779 +1.0 0.6 BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M... compare
mRNA_4349 12717 +1.0 0.6 K02873 RP-L13e, RPL13 large subunit ribosomal protein L13e compare
mRNA_273 8641 +1.0 3.4 K15174 PAF1 RNA polymerase II-associated factor 1 compare
mRNA_8081 16449 +1.0 1.7 K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase compare
mRNA_516 8884 +1.0 1.0 K04482 RAD51 DNA repair protein RAD51 compare
mRNA_1253 9621 +1.0 2.6 K04554 UBE2J2, NCUBE2, UBC6 ubiquitin-conjugating enzyme E2 J2 compare
mRNA_7667 16035 +1.0 1.7 Hypothetical Protein compare
mRNA_3312 11680 +1.0 1.2 Hypothetical Protein compare
mRNA_109 8477 +1.0 0.6 Hypothetical Protein compare
mRNA_1319 9687 +1.0 0.7 KOG0404 Thioredoxin reductase compare
mRNA_4518 12886 +1.0 1.7 Hypothetical Protein compare
mRNA_3364 11732 +1.0 0.8 K15423 PPP4C serine/threonine-protein phosphatase 4 catalytic subunit compare
mRNA_5990 14358 +1.0 0.4 Hypothetical Protein compare
mRNA_8365 16733 +1.0 1.9 Hypothetical Protein compare
mRNA_5765 14133 +1.0 2.5 Interpro Promethin compare
mRNA_1657 10025 +1.0 5.9 K08286 E2.7.11.- protein-serine/threonine kinase compare
mRNA_3955 12323 +1.0 0.8 K02355 fusA, GFM, EFG elongation factor G compare
mRNA_557 8925 +1.0 2.2 HMMPfam-Ras association (RalGDS/AF-6) domain-PF00788,ProSiteProfiles-Ras-associating (RA) domain profile.-PS50200,SMART-Ras association (RalGDS/AF-6) domain-SM00314,SUPERFAMILY--SSF54236 compare
mRNA_8258 16626 +1.0 1.4 Hypothetical Protein compare
mRNA_460 8828 +1.0 2.1 K15177 LEO1 RNA polymerase-associated protein LEO1 compare
mRNA_2549 10917 +1.0 0.7 HMMPfam-Chromatin modification-related protein EAF7-PF07904 compare
mRNA_1260 9628 +1.0 8.9 Hypothetical Protein compare
mRNA_7116 15484 +1.0 4.3 K04393 CDC42 cell division control protein 42 compare
mRNA_4468 12836 +1.0 1.5 K11866 STAMBP, AMSH STAM-binding protein compare
mRNA_6485 14853 +1.0 2.2 K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase compare
mRNA_895 9263 +1.0 0.5 Hypothetical Protein compare
mRNA_4364 12732 +0.9 2.2 SUPERFAMILY--SSF48371 compare
mRNA_4671 13039 +0.9 1.1 Hypothetical Protein compare
mRNA_3544 11912 +0.9 1.8 K03506 POLE4 DNA polymerase epsilon subunit 4 compare
mRNA_7796 16164 +0.9 0.1 K11322 EPC enhancer of polycomb-like protein compare
mRNA_5509 13877 +0.9 1.3 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 compare
mRNA_5701 14069 +0.9 0.3 K13120 FAM32A protein FAM32A compare
mRNA_1205 9573 +0.9 3.9 Hypothetical Protein compare
mRNA_4878 13246 +0.9 6.5 K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit compare
mRNA_4560 12928 +0.9 2.0 Hypothetical Protein compare
mRNA_5132 13500 +0.9 1.8 K03025 RPC6, POLR3F DNA-directed RNA polymerase III subunit RPC6 compare
mRNA_7656 16024 +0.9 1.3 Hypothetical Protein compare
mRNA_8345 16713 +0.9 3.4 K00062 E1.1.1.116 D-arabinose 1-dehydrogenase compare
mRNA_4299 12667 +0.9 0.6 K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1 compare
mRNA_5378 13746 +0.9 2.8 Hypothetical Protein compare
mRNA_5022 13390 +0.9 1.8 Hypothetical Protein compare
mRNA_6220 14588 +0.9 0.9 Hypothetical Protein compare
mRNA_8072 16440 +0.9 2.5 K14684 SLC25A23S solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41 compare
mRNA_7522 15890 +0.9 5.1 HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459 compare
mRNA_8467 16835 +0.9 1.6 Hypothetical Protein compare
mRNA_6716 15084 +0.9 2.1 Hypothetical Protein compare
mRNA_5844 14212 +0.9 1.7 HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF160240,SUPERFAMILY--SSF161111 compare
mRNA_4764 13132 +0.9 0.9 K12842 SR140 U2-associated protein SR140 compare
mRNA_6934 15302 +0.9 1.8 K12871 CCDC12 coiled-coil domain-containing protein 12 compare
mRNA_3770 12138 +0.9 2.9 K12606 RCD1, CNOT9, CAF40 CCR4-NOT transcription complex subunit 9 compare
mRNA_6114 14482 +0.9 1.2 Hypothetical Protein compare
mRNA_7113 15481 +0.9 0.8 Hypothetical Protein compare
mRNA_1508 9876 +0.9 2.3 KOG3140 Predicted membrane protein compare
mRNA_6138 14506 +0.9 1.2 Hypothetical Protein compare
mRNA_7333 15701 +0.9 2.3 SUPERFAMILY--SSF52047 compare
mRNA_2148 10516 +0.9 2.4 KOG2490 Predicted membrane protein compare
mRNA_7130 15498 +0.9 2.1 KOG3077 Uncharacterized conserved protein compare
mRNA_2097 10465 +0.9 0.2 K03217 yidC, spoIIIJ, OXA1, ccfA YidC/Oxa1 family membrane protein insertase compare
mRNA_1920 10288 +0.9 1.6 Hypothetical Protein compare
mRNA_5652 14020 +0.9 0.7 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_445 8813 +0.9 2.6 K03768 PPIB, ppiB peptidyl-prolyl cis-trans isomerase B (cyclophilin B) compare
mRNA_1429 9797 +0.9 0.9 HMMPfam-Protein of unknown function (DUF3237)-PF11578 compare
mRNA_2131 10499 +0.9 1.7 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_4192 12560 +0.9 0.4 K04797 pfdA, PFDN5 prefoldin alpha subunit compare
mRNA_5862 14230 +0.9 2.5 K14998 SURF1, SHY1 surfeit locus 1 family protein compare
mRNA_1916 10284 +0.9 2.0 HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Domain of unknown function (DUF3425)-PF11905,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 compare
mRNA_4080 12448 +0.9 0.5 Hypothetical Protein compare
mRNA_1538 9906 +0.9 0.9 K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10 compare
mRNA_1742 10110 +0.9 1.7 SUPERFAMILY--SSF48097 compare
mRNA_916 9284 +0.9 2.7 HMMPfam-Activator of mitotic machinery Cdc14 phosphatase activation C-term-PF08632 compare
mRNA_7331 15699 +0.9 1.5 KOG1666 V-SNARE compare
mRNA_6649 15017 +0.9 0.1 K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3 compare
mRNA_3132 11500 +0.9 1.1 Hypothetical Protein compare
mRNA_8343 16711 +0.9 1.2 Hypothetical Protein compare
mRNA_7236 15604 +0.9 0.4 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in buoyancy on lipid accumulation experiments

For buoyancy on lipid accumulation CN120 across organisms