Experiment setABuoy_Top for Rhodosporidium toruloides IFO0880

Compare to:

40 hrs High Buoyancy

200 most detrimental genes:

  gene name fitness t score description  
mRNA_1130 9498 +3.7 1.8 KOG1773 Stress responsive protein compare
mRNA_7792 16160 +3.5 1.5 Hypothetical Protein compare
mRNA_6846 15214 +3.2 2.4 K02603 ORC1 origin recognition complex subunit 1 compare
mRNA_5370 13738 +3.1 2.8 K18443 GBF1 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 compare
mRNA_5863 14231 +2.9 2.2 K09281 K09281 copper-fist transcription factor compare
mRNA_3383 11751 +2.8 1.1 HMMPfam-BSD domain-PF03909,ProSiteProfiles-BSD domain profile.-PS50858,SMART-domain in transcription factors and synapse-associated proteins-SM00751,SUPERFAMILY--SSF140383 compare
mRNA_7229 15597 +2.7 0.5 Hypothetical Protein compare
mRNA_4966 13334 +2.7 2.0 Hypothetical Protein compare
mRNA_7392 15760 +2.6 1.0 Hypothetical Protein compare
mRNA_2462 10830 +2.6 2.0 SUPERFAMILY--SSF52047 compare
mRNA_5144 13512 +2.6 2.5 BLAST putative mit domain-containing protein [Erysiphe neca... compare
mRNA_5507 13875 +2.5 1.5 KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase compare
mRNA_2270 10638 +2.5 9.4 K19833 CLA4 serine/threonine-protein kinase CLA4 compare
mRNA_3500 11868 +2.5 0.9 KOG2519 5'-3' exonuclease compare
mRNA_2438 10806 +2.4 1.6 HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224 compare
mRNA_2358 10726 +2.3 1.3 Hypothetical Protein compare
mRNA_4192 12560 +2.3 2.0 K04797 pfdA, PFDN5 prefoldin alpha subunit compare
mRNA_6443 14811 +2.3 0.8 K10427 DCTN5 dynactin 5 compare
mRNA_1891 10259 +2.2 1.7 K03083 GSK3B glycogen synthase kinase 3 beta compare
mRNA_6369 14737 +2.2 4.3 Hypothetical Protein compare
mRNA_3819 12187 +2.1 1.8 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_1007 9375 +2.1 2.4 HMMPfam-S1/P1 Nuclease-PF02265,SUPERFAMILY--SSF48537 compare
mRNA_1596 9964 +2.0 0.7 K14557 UTP6 U3 small nucleolar RNA-associated protein 6 compare
mRNA_5334 13702 +2.0 1.3 K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin compare
mRNA_8011 16379 +2.0 1.0 K09537 DNAJC17 DnaJ homolog subfamily C member 17 compare
mRNA_4693 13061 +2.0 1.6 Hypothetical Protein compare
mRNA_7219 15587 +1.9 1.0 K15053 CHMP7 charged multivesicular body protein 7 compare
mRNA_4866 13234 +1.9 1.1 KOG2881 Predicted membrane protein compare
mRNA_7078 15446 +1.9 0.9 Hypothetical Protein compare
mRNA_2647 11015 +1.9 1.3 Hypothetical Protein compare
mRNA_562 8930 +1.9 0.7 HMMPfam-HPC2 and ubinuclein domain-PF08729 compare
mRNA_1761 10129 +1.9 2.4 K07189 PPP1R3 protein phosphatase 1 regulatory subunit 3A/B/C/D/E compare
mRNA_6212 14580 +1.9 1.4 SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_6989 15357 +1.9 4.6 K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13 compare
mRNA_1684 10052 +1.9 1.2 Hypothetical Protein compare
mRNA_3286 11654 +1.9 1.0 Hypothetical Protein compare
mRNA_5914 14282 +1.8 1.8 HMMPfam-Nuclear protein Es2-PF09751 compare
mRNA_8156 16524 +1.8 8.6 BLAST expressed protein [Cryptococcus neoformans var. neofo... compare
mRNA_6182 14550 +1.8 5.6 K06665 SSN6 glucose repression mediator protein compare
mRNA_2682 11050 +1.7 4.5 K00589 MET1 uroporphyrin-III C-methyltransferase compare
mRNA_4592 12960 +1.7 1.2 K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A compare
mRNA_6185 14553 +1.7 4.3 SUPERFAMILY--SSF69118 compare
mRNA_645 9013 +1.7 0.8 KOG3104 Mod5 protein sorting/negative effector of RNA Pol III synthesis compare
mRNA_4349 12717 +1.7 1.0 K02873 RP-L13e, RPL13 large subunit ribosomal protein L13e compare
mRNA_2131 10499 +1.7 3.3 K09580 PDIA1, P4HB protein disulfide-isomerase A1 compare
mRNA_1686 10054 +1.7 1.3 BLAST putative protein [Melanopsichium pennsylvanicum 4] compare
mRNA_1393 9761 +1.6 1.1 Hypothetical Protein compare
mRNA_4290 12658 +1.6 0.5 Hypothetical Protein compare
mRNA_5071 13439 +1.6 9.4 KOG3038 Histone acetyltransferase SAGA associated factor SGF29 compare
mRNA_8289 16657 +1.6 7.3 KOG1601 GATA-4/5/6 transcription factors compare
mRNA_6533 14901 +1.6 0.9 Hypothetical Protein compare
mRNA_1569 9937 +1.6 0.8 KOG3114 Uncharacterized conserved protein compare
mRNA_7818 16186 +1.6 1.2 K10865 MRE11 double-strand break repair protein MRE11 compare
mRNA_3232 11600 +1.6 1.1 ProSiteProfiles-BRCT domain profile.-PS50172 compare
mRNA_7974 16342 +1.5 2.4 Hypothetical Protein compare
mRNA_4001 12369 +1.5 1.7 Hypothetical Protein compare
mRNA_109 8477 +1.5 1.1 Hypothetical Protein compare
mRNA_5652 14020 +1.5 1.4 KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development compare
mRNA_7796 16164 +1.5 1.2 K11322 EPC enhancer of polycomb-like protein compare
mRNA_7568 15936 +1.5 0.5 K18753 ZFP36L butyrate response factor 1 compare
mRNA_229 8597 +1.5 1.2 Hypothetical Protein compare
mRNA_423 8791 +1.5 1.6 KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion compare
mRNA_3956 12324 +1.5 2.4 KOG1843 Uncharacterized conserved protein compare
mRNA_5826 14194 +1.5 2.1 SUPERFAMILY--SSF52047 compare
mRNA_2459 10827 +1.5 0.5 KOG2747 Histone acetyltransferase (MYST family) compare
mRNA_7044 15412 +1.4 6.8 KOG4299 PHD Zn-finger protein compare
mRNA_6411 14779 +1.4 1.1 BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M... compare
mRNA_6220 14588 +1.4 1.3 Hypothetical Protein compare
mRNA_8230 16598 +1.4 6.5 K09668 LARGE glycosyltransferase-like protein LARGE compare
mRNA_3848 12216 +1.4 3.6 KOG1817 Ribonuclease compare
mRNA_1965 10333 +1.4 3.5 K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1 compare
mRNA_7572 15940 +1.4 0.6 Hypothetical Protein compare
mRNA_5765 14133 +1.4 3.6 Interpro Promethin compare
mRNA_2782 11150 +1.4 2.7 HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 compare
mRNA_1618 9986 +1.3 1.2 Hypothetical Protein compare
mRNA_2412 10780 +1.3 5.7 K04378 SRF serum response factor compare
mRNA_6775 15143 +1.3 0.7 K14784 CMS1 protein CMS1 compare
mRNA_5770 14138 +1.3 2.5 K15171 SUPT4H1, SPT4 transcription elongation factor SPT4 compare
mRNA_5930 14298 +1.3 1.3 Hypothetical Protein compare
mRNA_376 8744 +1.3 5.9 K00381 cysI sulfite reductase (NADPH) hemoprotein beta-component compare
mRNA_6560 14928 +1.3 1.5 Hypothetical Protein compare
mRNA_4925 13293 +1.3 3.7 ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045 compare
mRNA_5354 13722 +1.3 -0.4 KOG0557 Dihydrolipoamide acetyltransferase compare
mRNA_3364 11732 +1.3 2.0 K15423 PPP4C serine/threonine-protein phosphatase 4 catalytic subunit compare
mRNA_916 9284 +1.3 3.4 HMMPfam-Activator of mitotic machinery Cdc14 phosphatase activation C-term-PF08632 compare
mRNA_1864 10232 +1.3 0.6 SUPERFAMILY--SSF53300 compare
mRNA_5918 14286 +1.3 1.3 K11498 CENPE centromeric protein E compare
mRNA_1134 9502 +1.3 1.4 K10685 UBLE1B, SAE2, UBA2 ubiquitin-like 1-activating enzyme E1 B compare
mRNA_3687 12055 +1.3 1.5 K14837 NOP12 nucleolar protein 12 compare
mRNA_1697 10065 +1.3 3.1 BLAST Pro41 protein, putative [Rhizoctonia solani AG-3 Rhs1AP] compare
mRNA_1253 9621 +1.3 2.9 K04554 UBE2J2, NCUBE2, UBC6 ubiquitin-conjugating enzyme E2 J2 compare
mRNA_7063 15431 +1.3 1.5 Hypothetical Protein compare
mRNA_6819 15187 +1.3 5.1 SUPERFAMILY--SSF103107 compare
mRNA_121 8489 +1.3 0.9 BLAST Pc20g03530 [Penicillium rubens Wisconsin 54-1255] compare
mRNA_8281 16649 +1.3 2.0 Hypothetical Protein compare
mRNA_7921 16289 +1.2 0.4 KOG3022 Predicted ATPase, nucleotide-binding compare
mRNA_7116 15484 +1.2 5.5 K04393 CDC42 cell division control protein 42 compare
mRNA_5421 13789 +1.2 1.6 Interpro Domain of unknown function (DUF5102) 0 compare
mRNA_578 8946 +1.2 1.0 K05687 PARK7 protein DJ-1 compare
mRNA_3585 11953 +1.2 0.8 KOG1339 Aspartyl protease compare
mRNA_4328 12696 +1.2 1.7 HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383 compare
mRNA_4392 12760 +1.2 1.1 KOG3069 Peroxisomal NUDIX hydrolase compare
mRNA_4520 12888 +1.2 -0.5 Hypothetical Protein compare
mRNA_8018 16386 +1.2 1.6 Hypothetical Protein compare
mRNA_4299 12667 +1.2 0.5 K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1 compare
mRNA_2707 11075 +1.2 6.1 KOG0254 Predicted transporter (major facilitator superfamily) compare
mRNA_7369 15737 +1.2 0.4 KOG1203 Predicted dehydrogenase compare
mRNA_6485 14853 +1.2 2.6 K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase compare
mRNA_4493 12861 +1.2 2.6 SUPERFAMILY--SSF52047 compare
mRNA_557 8925 +1.2 2.2 HMMPfam-Ras association (RalGDS/AF-6) domain-PF00788,ProSiteProfiles-Ras-associating (RA) domain profile.-PS50200,SMART-Ras association (RalGDS/AF-6) domain-SM00314,SUPERFAMILY--SSF54236 compare
mRNA_3657 12025 +1.2 0.9 Hypothetical Protein compare
mRNA_7823 16191 +1.2 0.9 K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3 compare
mRNA_7419 15787 +1.2 0.9 Hypothetical Protein compare
mRNA_3815 12183 +1.2 1.0 K06631 PLK1 polo-like kinase 1 compare
mRNA_4978 13346 +1.2 4.0 K12883 NCBP2, CBP20 nuclear cap-binding protein subunit 2 compare
mRNA_6880 15248 +1.2 3.9 K00641 metX homoserine O-acetyltransferase compare
mRNA_7519 15887 +1.2 0.7 HMMPfam-Protoglobin-PF11563 compare
mRNA_7950 16318 +1.2 1.1 K04802 PCNA proliferating cell nuclear antigen compare
mRNA_5378 13746 +1.1 2.9 Hypothetical Protein compare
mRNA_1205 9573 +1.1 4.0 Hypothetical Protein compare
mRNA_3905 12273 +1.1 3.1 KOG0118 FOG RRM domain compare
mRNA_341 8709 +1.1 6.3 K00860 cysC adenylylsulfate kinase compare
mRNA_8467 16835 +1.1 1.7 Hypothetical Protein compare
mRNA_5075 13443 +1.1 6.3 K00958 sat, met3 sulfate adenylyltransferase compare
mRNA_1314 9682 +1.1 1.7 BLAST carboxymethylenebutenolidase [Rhizoctonia solani AG-1... compare
mRNA_7125 15493 +1.1 3.1 K11315 TADA3, ADA3, NGG1 transcriptional adapter 3 compare
mRNA_1245 9613 +1.1 2.7 HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481 compare
mRNA_407 8775 +1.1 1.9 Hypothetical Protein compare
mRNA_6649 15017 +1.1 0.4 K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3 compare
mRNA_5536 13904 +1.1 0.7 Hypothetical Protein compare
mRNA_2904 11272 +1.1 4.6 K03847 ALG12 alpha-1,6-mannosyltransferase compare
mRNA_1286 9654 +1.1 2.8 HMMPfam-short chain dehydrogenase-PF00106,SUPERFAMILY--SSF51735 compare
mRNA_4671 13039 +1.1 1.6 Hypothetical Protein compare
mRNA_6138 14506 +1.1 1.3 Hypothetical Protein compare
mRNA_6903 15271 +1.1 3.0 Hypothetical Protein compare
mRNA_8228 16596 +1.1 3.8 K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 compare
mRNA_7597 15965 +1.1 1.7 Hypothetical Protein compare
mRNA_182 8550 +1.1 0.8 K19828 MTG1 mitochondrial GTPase 1 compare
mRNA_8205 16573 +1.1 0.4 K11339 MORF4L1, MRG15, EAF3 mortality factor 4-like protein 1 compare
mRNA_2430 10798 +1.1 6.2 K09467 MIG zinc-finger protein CreA/MIG compare
mRNA_7773 16141 +1.1 2.3 K12857 SNRNP40, PRP8BP Prp8 binding protein compare
mRNA_1214 9582 +1.1 1.1 Hypothetical Protein compare
mRNA_7948 16316 +1.1 -0.1 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 compare
mRNA_2577 10945 +1.1 2.2 HMMPfam-Protein of unknown function (DUF3767)-PF12597 compare
mRNA_921 9289 +1.1 1.6 KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) compare
mRNA_4801 13169 +1.1 0.7 HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994 compare
mRNA_573 8941 +1.1 2.1 BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ... compare
mRNA_7085 15453 +1.1 2.1 HMMPfam-TRF2-interacting telomeric protein/Rap1 - C terminal domain-PF11626,SUPERFAMILY--SSF46689 compare
mRNA_4364 12732 +1.1 2.1 SUPERFAMILY--SSF48371 compare
mRNA_6027 14395 +1.1 0.9 HMMPfam-Cysteine-rich secretory protein family-PF00188,PRINTS-Allergen V5/Tpx-1 family signature-PR00837,SMART-SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.-SM00198,SUPERFAMILY--SSF55797 compare
mRNA_3269 11637 +1.1 2.5 Hypothetical Protein compare
mRNA_6268 14636 +1.1 0.7 HMMPfam-Survival motor neuron protein (SMN)-PF06003 compare
mRNA_7901 16269 +1.1 1.3 KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) compare
mRNA_5626 13994 +1.0 1.8 KOG1611 Predicted short chain-type dehydrogenase compare
mRNA_7522 15890 +1.0 4.4 HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459 compare
mRNA_8453 16821 +1.0 2.3 Hypothetical Protein compare
mRNA_386 8754 +1.0 2.0 Hypothetical Protein compare
mRNA_4564 12932 +1.0 4.0 K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45 compare
mRNA_7087 15455 +1.0 1.3 Hypothetical Protein compare
mRNA_6958 15326 +1.0 3.4 K09238 ACE2 metallothionein expression activator compare
mRNA_1000 9368 +1.0 3.8 BLAST glycosyltransferase 2 [Moniliophthora roreri MCA ... compare
mRNA_1034 9402 +1.0 1.5 SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083 compare
mRNA_5141 13509 +1.0 3.8 K12198 CHMP5, VPS60 charged multivesicular body protein 5 compare
mRNA_285 8653 +1.0 1.3 Hypothetical Protein compare
mRNA_6123 14491 +1.0 0.6 BLAST DNA polymerase [Rhizoctonia solani] compare
mRNA_7668 16036 +1.0 2.1 K18042 STYX serine/threonine/tyrosine-interacting protein compare
mRNA_5251 13619 +1.0 0.5 K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1 compare
mRNA_6447 14815 +1.0 1.5 Hypothetical Protein compare
mRNA_1261 9629 +1.0 0.5 K04712 DEGS sphingolipid Delta-4 desaturase compare
mRNA_2003 10371 +1.0 5.7 KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif compare
mRNA_5067 13435 +1.0 1.1 Hypothetical Protein compare
mRNA_1876 10244 +1.0 0.4 Hypothetical Protein compare
mRNA_4730 13098 +1.0 1.5 K06062 PCAF, KAT2, GCN5 histone acetyltransferase compare
mRNA_2230 10598 +1.0 1.2 HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112 compare
mRNA_1215 9583 +1.0 1.0 Hypothetical Protein compare
mRNA_2073 10441 +1.0 2.1 Hypothetical Protein compare
mRNA_3917 12285 +1.0 2.2 KOG4479 Transcription factor e(y)2 compare
mRNA_4569 12937 +1.0 0.9 HMMPfam-Integral peroxisomal membrane peroxin-PF06398 compare
mRNA_4079 12447 +1.0 9.1 KOG2518 5'-3' exonuclease compare
mRNA_885 9253 +1.0 7.8 K10590 TRIP12 E3 ubiquitin-protein ligase TRIP12 compare
mRNA_5082 13450 +1.0 1.2 K10696 BRE1 E3 ubiquitin-protein ligase BRE1 compare
mRNA_7343 15711 +1.0 1.6 K04798 pfdB, PFDN6 prefoldin beta subunit compare
mRNA_2111 10479 +1.0 0.5 K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1 compare
mRNA_3663 12031 +1.0 3.6 K01738 cysK cysteine synthase A compare
mRNA_4060 12428 +1.0 2.7 K01537 E3.6.3.8 Ca2+-transporting ATPase compare
mRNA_2688 11056 +1.0 1.9 Hypothetical Protein compare
mRNA_6532 14900 +1.0 1.7 K11352 NDUFA12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12 compare
mRNA_803 9171 +1.0 1.0 HMMPfam-Velvet factor-PF11754 compare
mRNA_2441 10809 +1.0 2.2 KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase compare
mRNA_327 8695 +1.0 0.9 KOG0378 40S ribosomal protein S4 compare
mRNA_1767 10135 +1.0 3.4 HMMPfam-F-box-like-PF12937 compare
mRNA_4051 12419 +1.0 1.0 HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685 compare
mRNA_8242 16610 +1.0 0.8 KOG3319 Predicted membrane protein compare
mRNA_5705 14073 +1.0 2.2 HMMPfam-Cysteine-rich secretory protein family-PF00188,SUPERFAMILY--SSF55797 compare
mRNA_4938 13306 +1.0 1.2 HMMPfam-Protein of unknown function (DUF1749)-PF08538,SUPERFAMILY--SSF53474 compare
mRNA_2918 11286 +1.0 2.6 HMMPfam-Acetyltransferase (GNAT) domain-PF13523,SMART-Siderophore biosynthesis protein domain-SM01006,SUPERFAMILY--SSF55729 compare
mRNA_4005 12373 +1.0 1.0 HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959 compare
mRNA_516 8884 +0.9 0.8 K04482 RAD51 DNA repair protein RAD51 compare
mRNA_2599 10967 +0.9 0.9 KOG2619 Fucosyltransferase compare
mRNA_2299 10667 +0.9 2.9 Hypothetical Protein compare


Specific Phenotypes

None in this experiment

For Rhodosporidium toruloides IFO0880 in buoyancy on lipid accumulation experiments

For buoyancy on lipid accumulation CN120 across organisms